K27803

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27803

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27803

Determination of introduced cDNA(s)

  • J013168J03 - Rice Full-length cDNAs - Original: J013168J03

    full reading [+] show sequence

    Nucleotide sequence: J013168J03 - full reading 
    GATTCGAGTC CTACCAGTAG CTAGCTAAGC AGCCGAGACG GTGGCGGTGG 
    AGGAGGTGGT GGTGGTGGTA GTAGTAGTAC GCCGGGGAGA GAGAGCCGTT 
    GCTGCTGCTG TGAGGTGAGG GCGAGATCTA GGAGGGAGGC GTCCATGGGA 
    GCTCGCTGCT CCAAGCTCTC CGTGTGCTGG TGGCCGCCGC ACTTCAAGTC 
    GCCGCTGCTT GAGAATGGCG CCGCCGCGGA CGACGGCAGC GGCGTGCCGG 
    TGTTCGCCGA GTACAGCCTC GACGAGCTAC GGGTGGCGAC CGACGGGTTC 
    TCTCCCGAGC GCATCGTGTC GGAGCACGGC GAGAAGGCGC CCAACGTCGT 
    CTACCGCGGC ACCCTCTTCA GCACCGGCCG CACCGTGGCC ATCAAGCGCT 
    TCGGCCGCTC TGCCTGGCCC GACTCCCGCC AGTTCTTGGA GGAGGCGATG 
    GCTGTCGGGC AGCTGCGGAG TGTCCGGCTG GCCAACCTGA TCGGCTGCTG 
    CTGCGAGAAT GGCGAGCGGC TGCTCGTCGC GGAGTTCATG CCGCACGAGA 
    CCTTGGCAAA GCATCTCTTC CACTGGGAGA CAAAGCCATT GAGCTGGGCA 
    ATGAGGGTAC GAGCTGCATT CTATGTGGCT CAGGCATTGG AGTACTGCAG 
    TAGCAAAGGG AGAGCTCTCT ACCATGATCT GCATGCATAC AGGGTTCTCT 
    TTGATGTGGA TGGTAACCCC AGACTGTCGT GCTTCGGTCT GATGAAGAAC 
    AGCAGGGATG GGAAGAGCTA TAGTACCAAT TTGGCTTTCA CGCCTCCTGA 
    GTACCTTAAG ACTGGCAGAG TAATTCCAGA GAGTGTGGTG TACAGTTTTG 
    GTACTATCTT GCTTGATCTC CTAAGTGGAA AACATATCCC ACCAAGCCAT 
    GCGCTTGACC TTATAAGAGG AAAAAATTAC CTGGTGTTGA TGGACTCTTG 
    CTTAGAAGGC CATGTCTCCA GCTCTGATGG AACTGAGTTG ATACGATTAG 
    CATCCCGTTG CTTGCAGTAT GAAGGTCGTG ACCGGCCAAA CCTGAAATCG 
    GTGGTGTCTG CTCTTGGAAA CCTCCAGAAA GATGCTTCTG CTCCTTCACA 
    TGCTTTACTA GGCATACAAC ATGATAAGGA AAATACAGAG CGAATTTCGT 
    TATCTGCTAT AGCGAAAGTT TATGCCAGAG CAGACCTTGA TGAGGTTCAT 
    GAGATGCTGG AGAATGATGG ATATTGTGAG GATGAAAGAG CAACATTCGA 
    GGTATCTTTC CATTCCTGGA CTGGCCAACA AGTATCTGAT AGTATTCTTG 
    TCAAGAAACA TGGAGACAGT GCTTTTCAAT CCAAGGATTT TGCGACTGCA 
    GTTGAGTGCT ACTCAAGGTT CATTGACACT GGTGTAATGG TGTCTCCGAC 
    TATGCTGGCA CGACGAAGTT TCGTATACAT GGTGCTCGGC AAGCTGCAAG 
    AAGGCCTTGC GGATGCAAAG AAAGCAGCAG ACATATCTCC TGAGTGGCCT 
    ACTGCACACT ACCTTCAAGG GATGGCATAT CTCGCCATGG GAATGGAGCC 
    TGAAGGGCAT GAAGAACTCA AGCAAGGCGC CGCTTTGGAA GCTGAAAGGA 
    ATGCTAGATA GAGATGAACT GTATAGCCCT CAAACATGAT GTGATGCCTC 
    CTCTCTTCTG TACCTAGATC GCCTGCATTT TGGGTGTCCT CCAGTGCTTT 
    GCCACCAATA GGGCTGTTTT TTGGTCTTCC CTAACTTGTA TTGGTATTTC 
    CAGTGGTTTT ACAACTCCTA GGTTGGCTGT TATGACACCT CCAATATATT 
    CATAAGTACA AAAAATGGGC AACTAGCATT CAAATAGCAA ACCGTGGATG 
    TGAGATTGTA AAGCTTTAAT GTTATTTCGT CACAATTCAT GTATATACAC 
    AACTTGCAGA CTTTTCTGAG GCGTCAAGAG TTAAAGACTG TTGTGAGTAA 
    TCAGCC

    Gene models with high sequence identity

    1. AT5G59010.1 [+] show detail - Protein kinase protein with tetratricopeptide repeat domain
      E-value: 0; Score: 635.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN KINASE-LIKE PROTEIN 3.6e-280
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.6e-280
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.2e-24
    HMMSmart Serine/threonine-protein kinase domain 0.000000046
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.00000011
    Gene3D no description 0.0000000000053
    Gene3D no description 2.5e-22
    Gene3D Tetratricopeptide-like helical 0.000000000000013
    superfamily Protein kinase-like domain 1.2e-43
    superfamily TPR-like 0.00000000000012
    ProfileScan Protein kinase, catalytic domain 19.99
    ProfileScan Tetratricopeptide repeat-containing 8.991

    See the detailed result >

    AT5G59010.1

    Model type
    Protein coding
    Short Description
    Protein kinase protein with tetratricopeptide repeat domain
    Computational Description
    Protein kinase protein with tetratricopeptide repeat domain; FUNCTIONS IN: binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase protein with tetratricopeptide repeat domain (TAIR:AT3G54030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR