K27810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27810

Determination of introduced cDNA(s)

  • J033046A10 - Rice Full-length cDNAs - Original: J033046A10

    full reading [+] show sequence

    Nucleotide sequence: J033046A10 - full reading 
    GACTCCTCAT CCACTCCCTC TCGCCGCCGC CTGCGACCTC GCCGCCGCGC 
    CCGCCTCACC TCACCTCGCC GGAGTTCCCC CACGATCGGG GGGCATCCGG 
    GGTGGGCGAT GGCGCCGCCC GGGACGAGCA GGAGGAGGGG GCGGCGTGGT 
    CGTCGGGCGG CGGGCCGGTG CGCGGGGCTG CCCCTCGACG CGCTGTTCGA 
    GATCATGCTG CGGCTGCCGG CGAGGGACGT CTGCCGCCTC CGCGCCGTCT 
    GCCGGTCGTG GCGCGCCGTG GCCTCCGACC GGGCCTTCGT CGACGCGCAC 
    GCCTCCCGCC ACCCGGGCCC GTACGTCGCC GCGTGCTTCT CCGATGAAGC 
    CGACGGCGGC GACGGCGACG AGTCCTGCGG CGGCGTCGAC ATCGTCGACC 
    TGTCCTCCGG CGACATCGTC AAGACTATTT ACACCGAAGT CAGTGGATCC 
    AGAGTGCAGC GCACGCGCCT CGACCTCGTC TGCCTCGTTG AAGGGCCTAG 
    CCCCTTGGAT GTCACCGTGC TGGATCCGGT CACCGGTGCT ACCTACATCC 
    CGGCAAAGAG TATCTCTGCG GATAATAAGG ATTTGCTGAG TTCAGGCCGT 
    CTCATAATGG AATCCTGTGC TTTTGGGAAG GTCCCCTCTA CAGGAGAGTA 
    CAAGGTGGTC CGTCTCCTTG GTTCTGGTAA TCCATGTGAG CTATACGAGT 
    GCGAGATCAT GACCGTGAAC AGTGCTGGCG CTTTGCAATG GAGGGCGATA 
    CAAGGACCTC AGTTGCCTGT TTGTTCAAGT AACAATATGA GAAGTGTGGT 
    CATCAATGGG GTTGCGTATT TCCTGTTAGA TTATTCGAGG CTCTATTGCT 
    CAAATGATGG CTTGCTTATT CGACCAGGTA ACATAGTTCC ATTTGACCTT 
    GAGACGGAGG AATGGGTGGG TATTCTAAAC GGACCGAAAC CAGTCGCCAG 
    GGGACGGGAT ATGATTGTTA TCTCCTCAAC CTTGGAAATT ATGGAGCCCC 
    TCTCGCTAGC CGACTTGAAT GGGTCCTTAG TGATGGTGCA TGCTGTATAC 
    GGTTCCCCCA TGGACCTGTG GTTTCTGTCA GATCTTGAGC AAGGACTCTG 
    GGTTAAGAAG TACAGCATAG ATTTCGAATA CTATAATAAC AATGCTTATC 
    CTTTGCTGCT GTTAGACGAT GAGAAGATTG TCTTCCTACT GCGGGGAACT 
    AATGTTCTAC AAAGTTATGA TCTAAAGGAT GACACATACA CTGATATATT 
    GGTGGTGCCA GATTTCAGAT CCGTTGGCAT TTATACTGGA GATCTATTGA 
    GCTTGGAGGG TGGTCTGAAC TGATTATGTA GACCATTGCG CCTCTTGTAT 
    TCTCCAAAGA CAAAGATGTT GCTGCTTTCG CTTGCTGAGG CTACTTGAGC 
    TACTTCGTCT CTTAATTTGC TCCCCAGATG GAGCAAATGA TGCTATCTCA 
    TTCAGTTACA ATAATGAAAT ACTCCTATAT CAGATACCTG TTTGTATTCC 
    GACGGTACAA GCTGATGTTA TCAGCCTGGT TTACCGTCTT TTTAAAATGT 
    CGACAAACCT GTGGTGGTGT GATCTGTATG CATGGTACTT GTCCTTTAAG 
    ACTATGGGAA AACCGTGTAT CACTGTCAGT TTAGCTTGGG CACATGATTA 
    CCAATGGGAA TTTTCTGAAC AATTTCATCC TCGTT

    Gene models with high sequence identity

    1. AT1G47765.1 [+] show detail - F-box and associated interaction domains-containing protein
      E-value: 5e-06; Score: 50.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam F-box domain, cyclin-like 7.9e-09
    HMMSmart F-box domain, cyclin-like 2.2e-09
    Gene3D no description 0.00068
    superfamily F-box domain, Skp2-like 1.7e-14
    HMMTigr F-box associated interaction domain 9.1e-05
    ProfileScan F-box domain, cyclin-like 9.391

    See the detailed result >

    AT1G47765.1

    Model type
    Protein coding
    Short Description
    F-box and associated interaction domains-containing protein
    Computational Description
    F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G47790.1); Has 1791 Blast hits to 1741 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1791; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR