K27813

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27813

Determination of introduced cDNA(s)

  • J013154G13 - Rice Full-length cDNAs - Original: J013154G13

    full reading [+] show sequence

    Nucleotide sequence: J013154G13 - full reading 
    GAGTGAGTCG TACAAGTGTA GAACAACACT TGTGCTACCT AGCTTAGTTA 
    TCTCGTTGCC AGCTGCACAG TTCCAGCTTC AGTTTCAGCT AGCGCTAGCT 
    GATCCACTAA TCACATCACT GCGTGCTTAA TTAGCTAGGA TTAATCGATT 
    CATAGATATC TCCTACAAAT TCCAAGTGAA ACAGCAGCAT CAGCAGTGGC 
    TAGCTGAGTG ATCGATCGAT CATGGCGGAG GCGGCGGGTG ATGGGGGTTG 
    GCCGGAGCCG GTGGTGAGGG TGCAGGCGCT GTCGGAGAGC GGGGCGGCGA 
    CGATCCCCGA CCGGTACGTG AGGCCGGAGA CGGAGCGGCC GTCGTCGTCG 
    TCGGAGGCGA ACGCCGTCGC CAACATCAAC ATCCCGGTGG TGGACATGTC 
    GTCGTCTCCG GGGACGGCGG CGGCGGCGGT GGCGGAGGCG TGCAGGGAGT 
    GGGGGTTCTT CCAGGCGGTG AACCACGGGG TGCCGGCGGC GCTGCTCCGG 
    CGTGCCCGCG GCGTGTGGCG CGGGTTCTTC CAGCAGCCGA TGGAGGTGAA 
    GCAGCGGTAC GGCAACTCGC CGGCGACGTA CGAAGGGTAC GGCAGCCGGC 
    TCGGCGTCGA CAAGGGCGCC ATCCTCGACT GGGGTGACTA CTACTTCCTC 
    CACGTCAGAC CACCCCACCT CCTCTCCCCT CACAAGTGGC CCCACCTCCC 
    CCCTGACCTC AGGGAGACGA CGACAGAGTA CAGCGAGGAG GTGAGGAGGT 
    TATGCGAGAG GTTGATGGCG GTGATGGCGG TGGGGCTAGG GGTAGAAGAA 
    GGGAGGCTAC AGGAGGCGTT TGGTGGTAGA GAGGGTGCTG GAGTGTGCGT 
    GCGGGTGAAC TACTACCCGC GGTGCCCACA GCCGGATCTA ACACTAGGGT 
    TGTCCTCGCA CTCCGACCCC GGCGGGATGA CGGTCCTCCT TGTCGACGAC 
    CGTGTCAAGG GACTCCAGGT TCGCCACGCC GGTGCATGGG TCACCGTTGA 
    CCCCGTGCCT GACGCCTTCA TCATCAACGT CGGCGACCAA ATTCAGGTGG 
    TGACGAACGC ATTGTACCGG AGCGTGGAGC ACCGGGTGGT GGTGAACGCG 
    GCGGAGGAGC GGCTGTCGAT CGCGACCTTC TACAACCCTC GGAGCGACCT 
    GCCGGTGGCG CCGCTGCCGG AGCTCGTGTC GCCGGAGCGG CCGCCGCTGT 
    ACAGCCCCAT GACCTTCGAC GACTACCGCC TCTACATCCG CCGCAACGGC 
    CCCCGCGGCA AGTCCCAGGT CGATCGCCTC GCCGCCGCCG CCGCCACAAT 
    ACCTAATTCT ACTACCACCA CTCAATAATA TCATCATCAT CATCATCTCC 
    GGCCATCGCC GCCGTCGCCG GCCGTCGCCG TGTATGATTC ATAATTAGTT 
    AGCTGATTAG TAATAAATTA ATTAATATGG ACATGCTAGC TAGCTACTAG 
    CTATATGTGC AGGCATGTGA TGAAATGGAA TTGATTTAAG TTTGTTGCGA 
    TCTGCAATTG ATTGTCTTGT CATCGTCGGT TCTCGATCAA ATTAATGATC 
    AGTTTATATA CT

    Gene models with high sequence identity

    1. AT3G11180.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 1e-116; Score: 417.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Isopenicillin N synthase 1.5e-06
    FPrintScan Isopenicillin N synthase 1.5e-06
    Gene3D no description 5.1e-107
    HMMPanther LEUCOANTHOCYANIDIN DIOXYGENASE-RELATED 1.1e-170
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 1.1e-170
    superfamily Clavaminate synthase-like 9.6e-106
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.6e-23

    See the detailed result >

    AT3G11180.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1); Has 8772 Blast hits to 8716 proteins in 1011 species: Archae - 0; Bacteria - 1149; Metazoa - 114; Fungi - 1021; Plants - 4999; Viruses - 0; Other Eukaryotes - 1489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR