K27825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27825

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27825

Determination of introduced cDNA(s)

  • J023028O21 - Rice Full-length cDNAs - Original: J023028O21

    full reading [+] show sequence

    Nucleotide sequence: J023028O21 - full reading 
    GTTCGACATC TCCCACCTTT CTCGCGCCCC CATTGGATTG GGGGCGTCCG 
    CCATTGATGA CCAGCTCCGA ATCTAGTACG GCGAATCGCC CGCGGCAAGG 
    AGCAGCGTCG CCGTCGCCCG TGGATCGCCG GGAGCCCGGA GGGAGGCGGC 
    GATGGCGGGC GCGGAGGCCG CCAATGGCAG GAACAAGTAC GCGGTTCTTG 
    ATCCCAGCGA CGAGCCGGAG GGGCGGAGGA GGCCCTCGGC GTGGGAGCGG 
    AGGAGCAAGG AGCGGTTCGT GCTCGCCTGC GCCATCTTCG CCTCGCTCAA 
    CGCCATCCTC CTCGGCTACG ATGTTGGTGT AATGAGTGGC GCAATAATCT 
    ACATTCAGAA AGATCTTCAC ATTACCGAAT TTCAGGAAGA AATCCTAGTT 
    GGTTGCTTGA GTGTGGTTTC ACTCTTGGGA AGTCTGTCAG GAGGAAGAAC 
    ATCTGATGCA ATTGGCAGGA AATGGACAAT GGCTCTTGGT GCAATTGTCT 
    TCCAGGCTGG TGCAGCCATA ATGACGTTCG CCCCTTCATT CACCGTGCTC 
    ATGATCGGGA GGCTCCTTGC TGGTGTGGGC ATTGGCTTTG GTGCCATGGT 
    ATCTGCAGTC TATATCGCTG AGATATCCCC TGCAGCTGCC CGTGGGACTC 
    TCACATCCCT CCCTGAGATC TGTATCAATT TAGGGATCCT CCTTGGTTAT 
    GTTTCCAACT ATGCTTTCTC GGGCCTTTCA GAGCATATCA ATTGGAGGAT 
    TATGCTTGGT GTTGGTATCC TCCCATCTGT CTTCATTGGA TTTGCACTTT 
    TTGTGATCCC AGAATCACCC AGGTGGTTGA TGATGGAAAA GAGAGTTCCA 
    GAAGCCAGGG CAGTATTGCT GCAGATAAGT GAGTCTGAAG CTGAGGTTGA 
    AGAAAGGATT GCTGAGATTG AGGAAGCTGC AAATCTTCTT AAATCGACGA 
    AATCCGAGGA CAAGGCAGTG TGGATGGAGC TGTTGAACCC TTCTCCTGCT 
    GTTCGTCGGA TGCTATATGC TGGCTGTGGT ATCCAAATGT TCCAGCAGAT 
    CACGGGTATT GATGCTACTG TCTATTACAG CCCAACTATT TTCAGAGATG 
    CCGGGATCAA GTCTGATCAG GAGCTTCTTG CAGCCACAGT GGCTGTTGGT 
    TTTACTAAGA CAGTGTTCAT ATTGGTTGCA ATTTTCCTCA TTGATAAAGT 
    TGGACGCAAA CCGCTTCTTT ATGTTAGCAC CATTGGAATG ACTATGTGCT 
    TATTTGTCTT GGGGATTGCA CTCACATTGC AAAAGCATGC CATGGGACTT 
    ATTTCTCCAA GAATTGGGAT TGACCTAGCA GTTTTTGCAG TTTGTGGAAA 
    TGTGGCTTTC TTTTCAATTG GCATGGGTCC AATATGTTGG GTCTTGTCTT 
    CAGAGATATT TCCTTTGAGA TTACGAGCTC AAGCATCGGC ACTAGGTCAA 
    GTAGGTGGTA GAGTGAGCAG TGGTTTGGTT TCCATGTCAT TTCTTTCCAT 
    GGCCCGTATT ATATCAGTGG CAGGAATGTT CTTTGTCTTT GCGGTTATCT 
    CGACTGTCTC TGTGGCCTTT GTGTATTTCT GCGTGCCAGA AACGAAAGGG 
    AAAACTCTGG AGCAGATTGA GATGATGTTT GAAGGTGGGA AAGAATGGAG 
    AGGGAGTGAG ATAGAGCTTG AGGATACACA ACATTTAATA CAGAGCAGCA 
    AGAAGTCTGT GTCTCTAGGC TGACACTATT AGAAACAATA AATTCGAAAT 
    CATTCGATGT TCAATGATGA ACCATACTTA TCCTGCTTCC ATCGCCTACG 
    GGATTCTGAA ATTCAGGTCT GCAAAATGAT CAGGCTGCCT TGGACTGCTA 
    CGGATTTTGA GGGCTTAACA CGAGTATATT AGGTGTAGGC GCAAAACAGC 
    ATGTAAATGT CTGCTTTACA CAACTACATC CCAAAATGTT ACCTGGGAGG 
    ACACAGATGA TGTTGTATAT GGCGGTATCT TCCACCTACC AAAAAATATA 
    GTTGTTGAAG TTCCTTATTC CACAGTTTAA TTTTAATAGA GGAAGAGGTG 
    TGTGATTTCC AACTGAATGA ATTCTGTGTG ATTCTTGATC CAGCTTTTTG 
    ATTTAGTCCT TCATGATATT GTAGTACTGT GGCTTTGTTG GTCTAGTATA 
    AAACCTTCAA GACCATGCCA TGTCTATAGC TTTGCATTGA CGTGCAGAGT 
    TCTGTAAATA CCAGATTTGG ATGATTCATT CTGTCAAATT AATTATTTAC 
    T

    Gene models with high sequence identity

    1. AT2G20780.1 [+] show detail - Major facilitator superfamily protein
      E-value: 8e-169; Score: 591.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUGAR TRANSPORTER 5e-177
    HMMPanther SUGAR TRANSPORTER 5e-177
    Coil coiled-coil 0
    ProfileScan MFS 50.022
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    HMMPfam General substrate transporter 8e-109
    HMMTigr Sugar/inositol transporter 1.6e-99
    superfamily Major facilitator superfamily, general substrate transporter 3.2e-75
    FPrintScan Sugar/inositol transporter 1.4e-21
    FPrintScan Sugar/inositol transporter 1.4e-21
    FPrintScan Sugar/inositol transporter 1.4e-21
    FPrintScan Sugar/inositol transporter 1.4e-21
    FPrintScan Sugar/inositol transporter 1.4e-21

    See the detailed result >

    AT2G20780.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: polyol/monosaccharide transporter 5 (TAIR:AT3G18830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR