K27826

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27826

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27826

Determination of introduced cDNA(s)

  • J033145C17 - Rice Full-length cDNAs - Original: J033145C17

    full reading [+] show sequence

    Nucleotide sequence: J033145C17 - full reading 
    GCGGAGAGGT GACTGCTAGC GAGGAAAGGG AGCATATATA CTACTATAGC 
    TTAGCTTGCT GCAGGTGCTA GCTAGCTGAG GCATGGAGCT TGACGAGGAG 
    TCCTTCTTGG ATGAGCTCAT GTCGCTGCGG CGTGATGGAT CGGCGCCGTG 
    GCAGGCGCCG CCGTACCCGG GTGGCGGCGG CGGCGGCGGC GGTGGCGGCA 
    TGATGATGAG TGACCTCCTC TTCTACGGCG GCGACGGCGG CAGCGCGGAG 
    GCGAGGGGCG GGATGGACGC GTCGCCGTTC CAGGAGCTGG CGTCCATGGC 
    GGCGCCGCCG CCTCAGCATC CGCACGAGGA GTTCAACTTC GACTGCTTGA 
    GCGAGGTCTG CAACCCGTAC CGCAGCTGCG GCGCCCAGCT CGTCCCCTCG 
    GAGGCGGCTA GCCAGACGCA GACGCAGCTC ACTCCTCTCC GCGACGCAAT 
    GGTGGCGGAG GAGGAGACGA GCGGCGACAA GGCGCTGCTC CATGGCGGCG 
    GCGGCTCGTC GTCGCCGACG TTCATGTTTG GAGGTGGCGC CGGAGAGAGC 
    TCGGAGATGA TGGCCGGCAT CAGAGGCGTC GGCGGCGGCG TCCACCCGCG 
    GAGCAAGCTC CACGGCACGC CGTCGAAGAA CCTCATGGCC GAGAGGCGGC 
    GTCGCAAGCG GCTCAACGAC CGGCTGTCCA TGCTCCGGTC CATCGTGCCC 
    AAGATTAGCA AGATGGACAG GACCTCGATC CTTGGTGACA CCATCGACTA 
    CGTGAAGGAG CTGACGGAGA GGATCAAAAC CCTCGAGGAG GAGATCGGCG 
    TCACGCCGGA GGAGCTCGAC CTGTTGAACA CGATGAAGGA TTCCTCCAGC 
    GGCAACAACA ACGAGATGCT CGTGAGGAAT TCCACCAAGT TCGATGTCGA 
    GAACCGGGGC AGCGGGAACA CGAGGATCGA GATATGCTGC CCGGCGAACC 
    CCGGCGTGCT GCTGTCGACG GTGAGCGCGC TGGAGGTGCT GGGGCTAGAG 
    ATCGAGCAGT GCGTCGTGAG CTGCTTCAGT GACTTTGACA TGCAGGCCTC 
    CTGCTTACAA GAGGACGGGA AGAGGCAAGT TGTCAGCACC GACGAGAACA 
    AGCAGACATT GTTCAGGAGC GCAGGCTATG GCGGAAGGTG TCTGTAGCTA 
    GCTAGCTATA CAATCCATTG AACGCTGAGC ACTGTGAGCA GGTACAGGTT 
    GCATATATAT GATCTTCATC ATCCATGATA TAGGAGTAAT AGCTATACAT 
    GCATATGCAC TTCGCTCCAG GAATTATAGT AGATCGAGTA CCATTTATGA 
    GTTCATATTC ATCAGCAGTG GTAGTACCTC GTTTCTGAAC ACACCAGAGA 
    GCAAATTAAA GATTTGCTCA AGTATTGTAA GCTTTGCATT TGTGAATCGG 
    TATGGGAACC GGCCGTGTGA TTTGTCGAAC ATTGGATTTG AATTAAACGC 
    CAAGGTACCA ATTGTTTGT

    Gene models with high sequence identity

    1. AT5G65640.1 [+] show detail - beta HLH protein 93
      E-value: 2e-51; Score: 200.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther CENTROMERE-BINDING PROTEIN 1, CBP-1 0.00015
    HMMPanther STEROL REGULATORY ELEMENT-BINDING PROTEIN 0.00015
    ProfileScan Helix-loop-helix DNA-binding domain 12.925
    HMMSmart Helix-loop-helix DNA-binding domain 3.4e-13
    superfamily Helix-loop-helix DNA-binding 1.4e-15
    Gene3D Helix-loop-helix DNA-binding 1.4e-05
    HMMPfam Helix-loop-helix DNA-binding domain 1.1e-09

    See the detailed result >

    AT5G65640.1

    Model type
    Protein coding
    Short Description
    beta HLH protein 93
    Computational Description
    beta HLH protein 93 (bHLH093); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G10570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR