K27829

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27829

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27829

Determination of introduced cDNA(s)

  • J033113G11 - Rice Full-length cDNAs - Original: J033113G11

    full reading [+] show sequence

    Nucleotide sequence: J033113G11 - full reading 
    GACTCTTTTT CAGTTTTTCC CCACCAAACT CGCCTCGCCC TCCTCTCTTC 
    CTTCTTCTTC TTCCTCCTCC GAGTACCAGA GCGCACGAAA CCCCTCTCGA 
    ATTCTCCGCT CTCCTCCCGC CGGTGACCCC ATCCGACCGA TCGCAAGCCA 
    TGGCCGCCGC CGCCGCCGAC TCCGCCGATC CCGTCATCAC CACCGCCACC 
    TGCGCGCACT GAGGAGCTAT GTAGCAATCC CCTAGGACTT GGCTTTCTTC 
    TTCTATAGGG CATTTTTTTT TCAGGCTATG GTTTACAGCT ACAGCTACTA 
    TGGGAGAAGG CAGTGTTTAG GGTTCTTGGT TACCAAGCTG GTATTTTTAC 
    TGTATAAGTG ACATCTCTAG TCTGTACCTG ATATCATGGT TGCTTTGCAT 
    TCTCAGTAAG GCCTTTGTCT AATTCTCTAA TGATCCGGGA AGGAAAACTG 
    GAAAACCCCC TGACAGTCAA TTTCATGTAC ATCAGCCCGG CGAAAAAAAA 
    AAAAAACGAT TACATGTACA TTGGCCCGGG TGAAAAAAAA AACAATTTGA 
    TGTACATTAC TAATTTTTGT ATATGCGCAC GCGTGTACAT AACTGGGCCA 
    ATTTTTTATC CAACTTGTGC TTGTTAACTT GTAGTAGTGT GTTTGACATG 
    GTGTTTGGAA GCATTTTACC TGGATGATTG ACATGGTTCT CCTCAAATTC 
    TTCAGCCATC GAGAAATTCC ATCTCCAAAC ATCGCGCTGC ATTCTGCACA 
    CTGCGCTCGC AACCTTCAAA AGTGTGAACA TTGTGGGTAT ATGGTTCCAA 
    AGAAGCTAAT GGATGAACAC TATGATGAAA ACCATGCTCC AATGATTTGC 
    TCACTTTGCC AAAAAACTGT ACAACGTGAG CTATGGGATC TTCATAAAGG 
    CTTACAATGC CCACAAAGGA TGCTTGCATG CCAATATTGT GACTTTGAAC 
    TACCTGCAGC TGATATTTAT GAGCATCAGG ACGTGTGTGG GAATCGAACA 
    GAATATTGTC AGCCTTGCAG GAAGTATGTC AGACTGCGGG AACAGATTGG 
    ACACGACATC CAGTTCCATT CCCAACCCAT TGTTGCTTCA GAATCTTCAA 
    GTGACAGAAG CACGCTGGAA GAAGAAGAGA GTTATCCAGC AGAAGAACAA 
    CCAGTACGAC CCAAGCACAC TCATGGCTTA CAACGCAAGC AATTTCTTGT 
    CACAATTGTG ATAGCTGGAA TTTCAATTCT GGTTGGATCA GTTCTGCTAA 
    AAAAGGGGTG GTTATCATGA TATTTCCAAC ATAAACATGA ATTTGCCTTC 
    TTAATGTGCA AATTCCTTCG TAGCCTATGG GCAGGGCAGA GATCCTTGAA 
    CTACAGTTTG AAGTCATTGT AGGAATGACC TGACTGATAT GTTTTTTTTT 
    ACCAGAAGGT ATTTCTACAT GCTGGCAGCT GGTAATCTAT GTAAAAATGT 
    TATTTACAAG TACGAGGCTT ACTTTTACAA GGGATCAATG CCATCTGTTT 
    TGTTGTTGTC TTGTTGATAT GTTTGTTACA GAGATGCTAG TTATTTGATT 
    GTGGATTGTA ACAACTTACC TTTCAACTGC TATAATATTT GAACGTCTCC

    Gene models with high sequence identity

    1. AT1G09920.1 [+] show detail - TRAF-type zinc finger-related
      E-value: 3e-43; Score: 173.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 5.2e-36
    HMMPanther TRAF-TYPE ZINC FINGER PROTEIN-RELATED 5.2e-36

    See the detailed result >

    AT1G09920.1

    Model type
    Protein coding
    Short Description
    TRAF-type zinc finger-related
    Computational Description
    TRAF-type zinc finger-related; BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G15420.1); Has 897 Blast hits to 860 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 570; Fungi - 106; Plants - 68; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR