K27832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27832

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27832

Determination of introduced cDNA(s)

J013159B10 - Rice Full-length cDNAs - Original: J013159B10

full reading [+] show sequence

GGTCGACTTG CGCATTAGAG ATTAGTGGTG TGGTTTTCTT ATCGATTTGT 
GCATTGGACA CCATCCGGTC GGCCGGCGCC ATTGGAGGAG GAACATGGCG 
GCGATGGCGT CGCCGCCGCC GCCGACGAGA GTGTGCGTCA CCGGCGCCGG 
CGGGTTCATC GGCTCGTGGC TCGTCAAGCT CCTCCTCTCC CGTGGCTACG 
CCGTGCACGC CACCCTCCGC GACCCGTGTG ATCCCAAGAA CGCTCATCTG 
AAGCAGCTGG ACGGGGCGTC GGAGATGCTG AGCCTGTTCA AGGCCGACGT 
GCTCGACGCC GGCGAGCTGT CCGCCGCCAT TGCCGGCTGC GAGGGGGTTT 
TCCATGTCGC CTCTCCCGTG CCCGGAGACA AGATCGTCGA TCCTGAGTTA 
GAAGTAATGG CTCCTGCTGT AAAGGGAACA CTGAATGTTC TTGAAGTTTG 
TTCGTCGTCT AAGAAGGTTC AGAAAGTTGT GGTGGTGTCA TCTACTGCTG 
CAGTTCATTA CAACCCCAAT TGGCCTCCAG GTAAGCCCAA AGATGAGAGC 
TGCTGGTCGG ACAGAAAGAT ATGCATGGAG AAGAAGGTTA GTAATGTCAG 
AAATTAGAGC TTCATGTTGT TGAACATTTG TTTTCTTATT TTACTGAGGG 
AGGAACTAAA GTTCATCATT TTACAAAAAT TTTTTTTTGA AATTTTCATT 
TTTACAATTT CTGTGTTTCA GGAGTGGTAT AGTGCTTCCA AGGTTATCGC 
TGAAAAGATG GCTTTGGAAT ATGCAGAGAA AAAAGGTCTA AACGTTGTTA 
CAGTCTGCCC TTGTTTAGTT TTTGGTCCAC AGTTGCAACC AACTGTCAAT 
ACCAGCAATG AACTCCTCAT CTATATAACA AAAGGAGGTC CAAACGTAAT 
GAGGAACATG TTGTTGCACA TAGTAGATGT CCGTGATGTG GCTGAAGCTT 
TGATTCTGGT ATACGAGAAA CCAGAATCAT CTGGCAGATA TCTTTGCGCA 
CCGTATCACA TCAGCCCAAA GGCTACTGTG GAGTTTCTCA AGAACATTTA 
CCCCAACTAC AATTATGTAA AGTGTAGTGC TGAAGTGAAT GGCAAGACTG 
AAATATTTAC ACCAATTTCG TCAGAGAAGT TGAAGAGCCT GGGCTGGAAG 
CCAAGGAAAT TGGAGGAGAC ACTCACAGAC AGCATTGAGT ACTATGAAAA 
GACAGGAATT TTGCAGGATG CTGGTGGAAG ACCTTGCGTT CTGCCTTACC 
TTTTTCACTT TCTTGTTGAG AACTGAGCAC TTCAGGAGCT GTGTTTTCTC 
TGTATGCTTG AGACACTAGC ACTGAATATG TGTGTGTGGG AATAACACAA 
AAGGCCTATC TTGGCACGAC ATATAACTTC CATCAATCCT TCAGTTCTGC 
GGTGACAGTA TATCTTTCAG TACAAAGTAA CGTGTTGTCG CCAATTAAGC 
TT

Gene models with high sequence identity

AT2G33590.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 5e-78; Score: 288.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	7.8e-26
Gene3D	NAD(P)-binding domain	1.3e-09
HMMPfam	NAD-dependent epimerase/dehydratase	3.2e-17
HMMPfam	NAD-dependent epimerase/dehydratase	4.8e-08
HMMPanther	CINNAMOYL-COA REDUCTASE	1.9e-71
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	1.9e-71
HMMPanther	CINNAMOYL-COA REDUCTASE	3.3e-54
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	3.3e-54
superfamily	NAD(P)-binding domain	4.9e-33
superfamily	NAD(P)-binding domain	3.5e-23

See the detailed result >

AT2G33590.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Computational Description: NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: response to cadmium ion, lignin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G33600.1); Has 13062 Blast hits to 13044 proteins in 1974 species: Archae - 275; Bacteria - 5592; Metazoa - 467; Fungi - 894; Plants - 2514; Viruses - 60; Other Eukaryotes - 3260 (source: NCBI BLink).
Link: InterPro Scan - TAIR