K27919

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27919

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27919

Determination of introduced cDNA(s)

J013014G15 - Rice Full-length cDNAs - Original: J013014G15

full reading [+] show sequence

GTATCGCCAG GCACACACCC TGCCCCGTCC TCTCCTCCCC CTTCCCCCCA 
CCTCGACGAA CCGACGGTTT CCCCGGCCAT GGCTGCTCCG CCGCCGCGGC 
GAACCCCGAA CCCCGAGCGC GGCAGCAGGA GGAAGGTGAG AGCACCGCCG 
CTCGCCGGAC TTACTGCTCC CGATCCCTAA CCCCGCTCGT CTCTCTGCTC 
TCGCAGGGCG AGGACCCGTG GCTCGCGGCG AGCCTTCGCC CGGGGAATTT 
CCTCCCGGGG CTCGCGATTG GGTTCCTCCT CGGCCTACTC GTCGACTTGA 
CCTCCTCATG GAGGCCCCAA TCGAGTCCAC CGCTGGCTCC GGCTGCCCCG 
GCGCCGCGGG GCTCCAAGCG GACGGGTGGT TCGTCGTCCG CTGGCGGGGG 
CATCGGCGGC GAAGAGCTTA AGATGGTTTT GGTCGTGCGT AAGGACCTCA 
AGATGCGGGC TGGAAAAATA GCTTCTCAAT GTGCTCATGC AGCAACTGGT 
CTGTATGCAG AACTGATGGC AAGGTGCTAA CGCGGTTTGC AATTTTTCTC 
ACTTAGCAAC CGGGGTCTTT TGAGACAGTG GGAGCAATTT GGACAAGCTA 
AGATTGTTTT AACATGCAAG AATCAGCAGG AAATGAATAG GATTAAGGAA 
ACCGCAGAAC ATCGAGGTAT CCCAACATTT GTTGTCGCTG ATGCAGGACG 
AACACAGGTA CAAGCTGGGT CTAAGACAGT TCTTGCAGTA GGGCCAGGGA 
GGAAAGCAGA CATAGATTCA GTTACTGGGA AGTTGTCTTT ACTATGAACT 
GCATCTCAGA CATGACACAC TGATTCCTTC AAAGATTCAA ACCAATTGTC 
GGGTTCAGTT GACGGTGGTA TCTTATGCTT GTAGTCCCAC AACAGGAGGT 
CAGAATCCTT GGGATGCTTT ACCCAGTTCT CAGGCTAACT CTGAAGCAAT 
TCTTCAAGAT CCAGTTCTAG AGTGGCTGAT TCAAAATTGC CGTTGGTTGT 
AATCTTTTCC TCCACATGTC ATTGTAGTCT ACCCACATGT TAGCGCATTC 
CAGCGAGTGG ATTTTACTTT GGGACAATGA ACAAGTATCT GTAGTTTCGA 
AGTAGTAGGT TATCACCTTC CTCAAAGTAA CGGATCATAT GTACCGTATG 
TCCAGAGGAA GCACAAAATG CGTAGAGGTG ACTTGTCTTG TCAAACATCC 
TTGGTGTGAA GCCTCTTGCT GTGAAAGTTC TGTATTCCCA AGTTCCCAAC 
TAGTCCATAT CTACTGGGAA TTGAATCTCT TTCTTGCAGA GCTGGAACTT 
TGTGCACTAG TTCCAACAAA ATTAGATTCT TGC

Gene models with high sequence identity

AT4G32900.2 [+] show detail - Peptidyl-tRNA hydrolase II (PTH2) family protein
E-value: 8e-46; Score: 181.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Peptidyl-tRNA hydrolase II	7.8e-13
superfamily	Peptidyl-tRNA hydrolase II	9e-22
HMMPfam	Peptidyl-tRNA hydrolase, PTH2	1.2e-12
HMMPfam	Peptidyl-tRNA hydrolase, PTH2	2.1e-28
Gene3D	no description	4.8e-09
Gene3D	no description	3.3e-20
HMMPanther	PEPTIDYL-TRNA HYDROLASE 2	1.1e-14
HMMPanther	PEPTIDYL-TRNA HYDROLASE 2	8.1e-30

See the detailed result >

AT4G32900.2

Model type: Protein coding
Short Description: Peptidyl-tRNA hydrolase II (PTH2) family protein
Computational Description: Peptidyl-tRNA hydrolase II (PTH2) family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase II (PTH2) family protein (TAIR:AT5G16870.1); Has 933 Blast hits to 933 proteins in 345 species: Archae - 258; Bacteria - 52; Metazoa - 200; Fungi - 129; Plants - 88; Viruses - 8; Other Eukaryotes - 198 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013136J16 - Rice Full-length cDNAs - Original: J013136J16

full reading [+] show sequence

GATCTTCGAA ATGCGGCCCA TGACGAGCCC ACCTCTCCTC TCGCCCTCCT 
CCTCCTCCTC CCGTCTCCTC CTCCTCCGCC TCCTCCTCTC CCGCCGCCGG 
AGCCCCGCCT CGCGCTCCCC TCCTCCTCCC CTCCGCCGCC GCCTCCCTCT 
CCTCGCTGCC TCCATGTCCT CCTCCTCCTC CACCGCCGCC ACCAGAAACC 
CCGGCTCCGT CGTCGCCGAC GCCGACGGCC TCGCCCGCAA GGTCGCCGCC 
ATCCGCGCCG CCGGCCCCGC TAAGCTCCAG GTCATCGCGG ACTTCGACGG 
CACGCTCACG CGGTACTGGT ACGACGGCTC CCGCGGCCAG AGCAGCCATG 
GGTTGCTGAG GCAGGGGAAC GAGGAGTACG ACGCCAAGAG GGAGGAGCTG 
TTCGAGCACT ACCACCCCAT CGAGATCTGC CCCGACATCC CGCTCCCCGA 
GAAGGCCAAG CTCATGGAAG AATGGTGGGA GAAGACACAT GCTCTCCTTA 
TCGAAGGTGG ACTTACATAT GAAGCTATAA GGCAATCTGT GGCTGATGCT 
AAAATCACTT TTAGAGATGG AGTGGTGAAG CTCTTTGAGT TCTTGGAGGA 
GAGAGATATT CCAGTATTAG TATTTTCTGC TGGACTTGCA GACATAATTG 
AGGAGGTCTT CCGGCAGAAA CTCCACAGAT CATTCAAGAA CATTAAGGTT 
GTGTCCAACA GGATGGTCTT CAATGAAGAA GGTCGTCTTG TTTCATTTAA 
AGGAAAGACT ATTCATGTTC TAAACAAAAA TGAGCATGCC TTGGACATGG 
CAGCTCCAGT GCATGACAAT TTGGGTGATC CAAATGGATA TACTGATGAC 
TATTCGTTGG TGAAGAAGAG GACCAATGTG CTTCTCCTTG GAGATCACAT 
TGGCGACCTT GGAATGTCTG ATGGTCTAAA CTATGAAAAC AGGATTGCTG 
TTGGATTTCT GAACAACAAC ATCGAGAAAT CTCTAAAAGA TTACTCCGAG 
GCATTTGATA TTGTCTACTT GAATGACGCG CCAATGGTGG GAGTTGTTGA 
GCTTGTATCT GAACTATGTC CTTAACCAAA TGATGTTTTG CTGAGCTTAG 
AAGCCGCATC CGCCTCCCGC TCTTGCTGAA ATCTGGGAAT CCTATTCCCC 
ACTTCACTAA CCGGCTGGGT TTGTTCAATA AGAAGCAATT TTGTACAGGC 
TTGACATCAA GCAAGCCAAG CAGCCTTTTG AACCAATATC TCCTTAAGCC 
AATCCAAACT TGTATGAAGT CCAGAACACA TTTGTGAAAT GGAATTTCAA 
ATTTGGTTTT GGTCCCC

Gene models with high sequence identity

AT2G38680.1 [+] show detail - 5'-nucleotidases;magnesium ion binding
E-value: 1e-110; Score: 396.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	UMPH-1	1.1e-90
HMMPanther	HAD-superfamily hydrolase, subfamily IE	1e-68
superfamily	HAD-like	8.5e-12

See the detailed result >

AT2G38680.1

Model type: Protein coding
Short Description: 5'-nucleotidases;magnesium ion binding
Computational Description: 5'-nucleotidases;magnesium ion binding; FUNCTIONS IN: magnesium ion binding, 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IE (InterPro:IPR006434); Has 332 Blast hits to 332 proteins in 84 species: Archae - 4; Bacteria - 0; Metazoa - 264; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link: InterPro Scan - TAIR