K27926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27926

Determination of introduced cDNA(s)

  • J033101G08 - Rice Full-length cDNAs - Original: J033101G08

    full reading [+] show sequence

    Nucleotide sequence: J033101G08 - full reading 
    GAACCGTCCA CTCCGCCGCC GCGACAACTC CCTGCGGCGA CCATGGCGAC 
    AAGATCAGCG CTACCGCCGC GCCGCCGCGG CCTCCCGGAG GAGCTCGTGG 
    TCTGGGAGAT CCTGGTACGG CTTCCCCCTA AACCCCTCCT CCGCTGCCGC 
    TTGGTCTGCC GCGCATGGCG CCGCCTCACC TCCACCCGCG GCTTCCTCCT 
    CGCCCACCAC CGCCATCAAC CCTCCCTCCC GCTCGTCGTC GGCTACGGCT 
    GCGACGGTGG GAGCCTCCTC GACATCCTCA CCCTTGACCG CCGGGACGCC 
    GCTCGGCCGC GGCTCCATCC CGTGGTGCGG CTCAAGAACG CCGCTCACTT 
    CGTGAGTGCA TCCTGCGACG GCATCCTTAT CCTCAACATG ACCAACTGCG 
    GCGAATTTTA CTACTCGGTC TGTAACCCGA CCACTCGTCA ATTCGCTGAT 
    CTGCCGATGC TCACTGGTTT CTTCGTCATG GGGTTTTACC AGCACCGCCC 
    CACCGGTGAA TACCGGCTTC TACTCTACTA CCAGTTTCGG CCGGAAGGTT 
    CTGAGGATAG ATATGCCTGC TACGTCTACA CATTGGGCTC CAGCGAAATG 
    CCGAGGTGCA TTGGGTGGAT GGAGGAGGTT GCAACCTGCA CAGCTGTTGT 
    GCTGCTCCAT GGTAGCCTGC ATTGGTATAA TTACAAAACA GACAAGATTT 
    TGATTTTCAA CACCGCATCC GAGTCGTTCT GGTCGATGCG TCAGGCTGAC 
    AAGATGAATG GGAATGATCT GTTTGAGATT GATGGTACAC TTGGCATCTA 
    CTTCTGTAAT GATGATGCGA CGATCGTAGA TATTTGGGTA CTGCAGGATT 
    ACAAGACAGA ATTCTGGTCT CTCAAGCACC GGATTGAATT GCCAGTCCCA 
    GATATAAAGG GGAAGCTTGA TGATGGTGAT GATTGGAGTG CGATGGTATT 
    GTCTGAGGAC GGGGATGTGC TTGTGCTGGT TTACTACAGA CAATGGCTGC 
    TTTACATTGG TACTGATGGC AAGCTGTTGG CGAGTTTTCA ACATGATGTT 
    GGGTGCCACT ACAATACTCC TCTGAAGCTT AAGCAAAGCC TTGTTCCACA 
    TGCATTCTTT CCATTGTTAA AGGGTTATGT CGTGAATGCT CGACCTTTCA 
    TCTGATGCTG GAGCGGCTTT GCTAGTTGTT GGACTCGTCT TGAGATGGTT 
    TCTTTTCATC CTGGTGGGTA GCAACTTTTG GTGCTGTCTT TTAGAGGTTG 
    TGGACACTGT TATCTTGTGG GATGTCACCT TGCTAAAATG TACTCAAACC 
    CTGCTGAACT ATGTAATATG CAGTAGCTGG TTTGCCAATC TTTTTC

    Gene models with high sequence identity

    1. AT5G49610.1 [+] show detail - F-box family protein
      E-value: 0.00000003; Score: 57.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr F-box associated interaction domain 0.0000014
    HMMPfam F-box associated domain, type 3 0.0000025
    HMMPfam F-box domain, cyclin-like 0.0000036
    HMMSmart F-box domain, cyclin-like 0.00017
    superfamily F-box domain, Skp2-like 0.000000000047

    See the detailed result >

    AT5G49610.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G33530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR