K27930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27930

Determination of introduced cDNA(s)

  • J023108B21 - Rice Full-length cDNAs - Original: J023108B21

    full reading [+] show sequence

    Nucleotide sequence: J023108B21 - full reading
    GTGTACACCC CTATCTCACC CACCACCATC CCAAGGCGGC GCGACGACCC 
    ATCTCGCCGC CGCGAATTCT CTCTCCGGCG AACTCCAACT CGAACCCTCC
    CTCCGCCGAC TCCGCTCACG AGACCTAAAC CCTCCTTCCC TCTCCTCTCG
    TCTCGTTCCC ACCACCATGC TGGGCATCGC GAGGAGGCGC CTCGGATCCG
    GATGCGCGCT GGGGCAACTC ATGCAGGCGC TCCGACCGGC CGCCGCCGCC
    GCCGCGGCGA GGACCTACTC CGCCGCCGCC AAGGAGATGA CTGTGCGTGA
    AGCATTGAAT TCTGCCCTTG ATGAGGAGAT GTCTGCTGAC CCTTCTGTTT
    TCTTGATGGG AGAAGAGGTT GGAGAATACC AAGGGGCATA TAAGATATCG
    AAGGGTTTGT TAGACAAATA TGGCCCTGAT AGGGTTCTTG ACACACCAAT
    CACAGAGGCT GGTTTTACTG GAATTGGTGT TGGTGCTGCC TATCAAGGTC
    TTCGCCCTGT GGTTGAGTTC ATGACATTTA ACTTCTCTAT GCAGGCAATT
    GATCACATCA TAAATTCAGC TGCCAAGTCG AACTACATGT CAGCTGGTCA
    GATAAACGTT CCTATTGTTT TTAGAGGGCC AAACGGTGCT GCTGCTGGTG
    TTGGTGCTCA GCACTCTCAG TGTTATGCGG CTTGGTATGC GCATGTACCA
    GGATTGAAGG TCCTAACTCC TTATTCTGCA GAAGATGCTC GGGGCTTGCT
    AAAAGCAGCA ATCAGGGATC CAGACCCTGT TGTTTTCTTG GAAAATGAAC
    TGCTCTATGG TGAATCATTC CCTGTTTCTG CGGAAGTTCT TGATTCTAGC
    TTCTGTCTAC CGATTGGGAA GGCTAAGATA GAGCAAGAAG GAAAAGATGT
    TACAATTACC GCATTCTCCA AGATGGTCGG ATATGCTCTT CAGGCTGCAG
    AGATACTTTC CAAGGAGGGA ATCAGTGCTG AGGTGATCAA TCTTCGGTCA
    ATTAGGCCAT TGGATAGAGC TACTATCAAT GCATCAGTTA GGAAAACCAA
    CAGATTGGTA ACCCTTGAAG AAGGATTTCC ACAACATGGG GTTGGCGCTG
    AAATATGCAT GTCTGTTGTA GAGGACAGCT TTGAATATCT TGATGCGCCA
    GTTGAGAGGA TTGCTGGAGC TGATGTGCCC ATGCCCTACG CTGCCAACCT
    TGAGAGGATG GCTGTTCCAC AGGTTGAGGA CATTGTTCGT GCAGCGAAGC
    GAGCCTGCTA CAGAGCAGTA CCAATGGCAG CAACAGCCTA ATTCAGTGAC
    AGTTTTTGTT TCTCCATCTT GTCTTCTTCC CAATGGCCAG GAGTATGTAC
    CACAGCATAA TGGTGTCTTC CCAAGTCTCA ACTAGTGTAA GCTGATTTTG
    TAGATCCACC ATGAGGTGTC AATCCCCTTC TTTCTTTAGT CGCAGTCGGA
    TGGCTGCATC CGTTCATAGT CCAAACTGAA TATACACATT TGAACCATGC
    GACTTCTGGA GATTTTACAT GACCGGTTGA TGTCAATAAC ATGTATGTAA
    TGGAGCTCCA TAAGTCGGCA AACCAAACCC CCATTAGATT CAATGTTTGT
    TCGTCCATGC CTCTGAATTG AATGCACTGG ACTCTACAAG TTCATGGTCC
    TGTTATCC

    Gene models with high sequence identity

    1. AT5G50850.1 [+] show detail - Transketolase family protein
      E-value: 2e-169; Score: 592.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Transketolase-like, pyrimidine-binding domain 9.8e-64
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 7.4e-71
    superfamily Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II 5.1e-47
    HMMPanther PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUB 2.3e-208
    HMMPanther DEHYDROGENASE RELATED 2.3e-208
    Gene3D no description 5.2e-79
    Gene3D Transketolase-like, C-terminal 3.6e-42
    HMMPfam Transketolase-like, pyrimidine-binding domain 2.9e-48
    HMMPfam Transketolase, C-terminal 3.6e-40

    See the detailed result >

    AT5G50850.1

    Model type
    Protein coding
    Short Description
    Transketolase family protein
    Computational Description
    MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 17839 Blast hits to 17830 proteins in 2804 species: Archae - 215; Bacteria - 11375; Metazoa - 619; Fungi - 227; Plants - 405; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR