K27930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27930

Determination of introduced cDNA(s)

  • J023108B21 - Rice Full-length cDNAs - Original: J023108B21

    full reading [+] show sequence

    Nucleotide sequence: J023108B21 - full reading 
    GTGTACACCC CTATCTCACC CACCACCATC CCAAGGCGGC GCGACGACCC 
    ATCTCGCCGC CGCGAATTCT CTCTCCGGCG AACTCCAACT CGAACCCTCC 
    CTCCGCCGAC TCCGCTCACG AGACCTAAAC CCTCCTTCCC TCTCCTCTCG 
    TCTCGTTCCC ACCACCATGC TGGGCATCGC GAGGAGGCGC CTCGGATCCG 
    GATGCGCGCT GGGGCAACTC ATGCAGGCGC TCCGACCGGC CGCCGCCGCC 
    GCCGCGGCGA GGACCTACTC CGCCGCCGCC AAGGAGATGA CTGTGCGTGA 
    AGCATTGAAT TCTGCCCTTG ATGAGGAGAT GTCTGCTGAC CCTTCTGTTT 
    TCTTGATGGG AGAAGAGGTT GGAGAATACC AAGGGGCATA TAAGATATCG 
    AAGGGTTTGT TAGACAAATA TGGCCCTGAT AGGGTTCTTG ACACACCAAT 
    CACAGAGGCT GGTTTTACTG GAATTGGTGT TGGTGCTGCC TATCAAGGTC 
    TTCGCCCTGT GGTTGAGTTC ATGACATTTA ACTTCTCTAT GCAGGCAATT 
    GATCACATCA TAAATTCAGC TGCCAAGTCG AACTACATGT CAGCTGGTCA 
    GATAAACGTT CCTATTGTTT TTAGAGGGCC AAACGGTGCT GCTGCTGGTG 
    TTGGTGCTCA GCACTCTCAG TGTTATGCGG CTTGGTATGC GCATGTACCA 
    GGATTGAAGG TCCTAACTCC TTATTCTGCA GAAGATGCTC GGGGCTTGCT 
    AAAAGCAGCA ATCAGGGATC CAGACCCTGT TGTTTTCTTG GAAAATGAAC 
    TGCTCTATGG TGAATCATTC CCTGTTTCTG CGGAAGTTCT TGATTCTAGC 
    TTCTGTCTAC CGATTGGGAA GGCTAAGATA GAGCAAGAAG GAAAAGATGT 
    TACAATTACC GCATTCTCCA AGATGGTCGG ATATGCTCTT CAGGCTGCAG 
    AGATACTTTC CAAGGAGGGA ATCAGTGCTG AGGTGATCAA TCTTCGGTCA 
    ATTAGGCCAT TGGATAGAGC TACTATCAAT GCATCAGTTA GGAAAACCAA 
    CAGATTGGTA ACCCTTGAAG AAGGATTTCC ACAACATGGG GTTGGCGCTG 
    AAATATGCAT GTCTGTTGTA GAGGACAGCT TTGAATATCT TGATGCGCCA 
    GTTGAGAGGA TTGCTGGAGC TGATGTGCCC ATGCCCTACG CTGCCAACCT 
    TGAGAGGATG GCTGTTCCAC AGGTTGAGGA CATTGTTCGT GCAGCGAAGC 
    GAGCCTGCTA CAGAGCAGTA CCAATGGCAG CAACAGCCTA ATTCAGTGAC 
    AGTTTTTGTT TCTCCATCTT GTCTTCTTCC CAATGGCCAG GAGTATGTAC 
    CACAGCATAA TGGTGTCTTC CCAAGTCTCA ACTAGTGTAA GCTGATTTTG 
    TAGATCCACC ATGAGGTGTC AATCCCCTTC TTTCTTTAGT CGCAGTCGGA 
    TGGCTGCATC CGTTCATAGT CCAAACTGAA TATACACATT TGAACCATGC 
    GACTTCTGGA GATTTTACAT GACCGGTTGA TGTCAATAAC ATGTATGTAA 
    TGGAGCTCCA TAAGTCGGCA AACCAAACCC CCATTAGATT CAATGTTTGT 
    TCGTCCATGC CTCTGAATTG AATGCACTGG ACTCTACAAG TTCATGGTCC 
    TGTTATCC

    Gene models with high sequence identity

    1. AT5G50850.1 [+] show detail - Transketolase family protein
      E-value: 2e-169; Score: 592.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Transketolase-like, pyrimidine-binding domain 9.8e-64
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 7.4e-71
    superfamily Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II 5.1e-47
    HMMPanther PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUB 2.3e-208
    HMMPanther DEHYDROGENASE RELATED 2.3e-208
    Gene3D no description 5.2e-79
    Gene3D Transketolase-like, C-terminal 3.6e-42
    HMMPfam Transketolase-like, pyrimidine-binding domain 2.9e-48
    HMMPfam Transketolase, C-terminal 3.6e-40

    See the detailed result >

    AT5G50850.1

    Model type
    Protein coding
    Short Description
    Transketolase family protein
    Computational Description
    MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 17839 Blast hits to 17830 proteins in 2804 species: Archae - 215; Bacteria - 11375; Metazoa - 619; Fungi - 227; Plants - 405; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR