K27934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27934

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27934

Determination of introduced cDNA(s)

  • J023132L07 - Rice Full-length cDNAs - Original: J023132L07

    full reading [+] show sequence

    Nucleotide sequence: J023132L07 - full reading
    GACTCTCGGA CTCTCCACTA CTCTTCGCCG CTCGCCGCCT CCTTGCTCTC 
    ACCGCCGGTC ACGACGGCGC CGCCACCCAC CCGGTCCATC ACCTCCTCTC
    CCGCCGAGCA ACGCTGGAAT GGCCGGCCGC GGAAACGCCA CCGGCTCCAC
    CCGCACCCGC GCCTCCGTCA ACGTCGTCGC GGTCCACGGT GGTAAAGATT
    TGTACAAATC CTGCTCGTTG TTCCAAGATT CCGTCGATTG GTTTTCGCCG
    AAAGAAAAGC AAAATTATTC GCAAAGTGCG GCGGCGATGG AGCTATTCCC
    CGTCGATTTC CCCTTTCCAC GCCCTCCATT GGCGTTTGGC GCGACGGATC
    GGCATCAATC CCCCCTCCCC CACGAAGCTT CCATTGGTTC CCCCGCGTGT
    TCTTGACCCC TTCATCTTCC ATGGATCCGG GCATCTCACT CTCGCTGCAG
    CCATAGCTCG TCTGGGTGTT CTTGGTCTCC CAAAACCACC AAAGATCAAG
    CGTTGCACGG TTGCACCTGA GATTCAGAGA GAGGAGGATT GGGAAAGATG
    GTCGGAGCCA CGGCGAGTGC TTTGATCGGG GTGATGAATC CCCTCCTCAC
    GAAGCTCTCC GGCCTGCTCG AGAGGGAGTA CGGCAAGCTC AAGGGGGTGG
    GCCGCGAGGT CGCGCTCCTG CGAGACGAGC TGAGCAGCAT GAACACCGCG
    CTGGAGGCGG TCTCCGATTC GGAGGAGGAG CCCAGCTCGC AGGTCAAGGA
    GTGGATGCGC CAGCTGCGGG AGCTGTCCTA TGATGTAGAG GATTGCATCG
    ACGTCTTCGT GCACCGCCTT GGCCACCATG ACCCCGGCGA CGGGCTCTTC
    CGCAGGACCA AACGCCGGCT CAAGGCTCTC CGGAGCCGCC ACTGCATCGC
    AGGCCAGATC GCCGAGCTGA AGGATCGTGC CGTGCTGGTC AATGACCGGC
    GCAAGAGGTA TGAGTTGGAT GCAGCTGCAT CTAGCTCTGC TGCGATCGCC
    ATCGATTCCA GGCTGCCTGC GCTGTTCGAG GAGATGGACA GGCTTGTGGG
    CATCGAAGGT CCAAGGGATG AACTTGTTGA ATTTCTTACG GGAGGAATCA
    ATTTGGCTCC ACAACGCAGA GTTGTCTCTA TTGTCGGATT TGGGGGATTA
    GGCAAGACAA CTCTTGCCAA TCAGGTCTAT CAACATATCA AAAGCCAATT
    TGATCGCACA GCTTTTGTGT CTGTGTCACG GAATCCCAAC GTCAATAAGA
    TCCTAGCCAA CATACTTATT GGAATTCTCG AGACAAGAAA GCTATCATCA
    GTTCATCAGA AGCAGCATAG TGACACAATA GAAGATCTAA AGCACAAAAC
    TTTTGAAGAT TGTAAGCTTA TCAGCCTGAT AAGAGAAAAC CTACAGAATA
    GCAGGTACTT CATTGTAATT GATGATATAT GGGATAAAGC TGCATGGCGA
    GACCACCTCC GATTTGCTTT TCCTGAGAAT AACTCTGCAA GCAGAATAAT
    TACAACTACA CGCATCAATG ATGTAGCTAT AGCTTGTCAC TTCTCACATG
    AAGATTTTGT TTATGCCATG AAGCCCCTTA GCAGTGAGAA CTCTGAGGCA
    TTATTTTTTA GAAGAATCTT TAGCTCCAAG GAGAAATGCC CCCCTGAATT
    GGAAGAAGTT GCTGATGATA TACTTAAAAA GTGTGATGGT TTGCCATTGG
    CCATAGTTAG TATAGCTAGC CTTTTATCAT GTAAACCAGT TACGAAGCAG
    GAGTGGGTAT GGGTGCTGAA CTCCTTTGGT TCTACAGTTA TGAAAGATCA
    GGGGTCACAC GAGTTGGCAG TAGTGAAGAG GATACTATTT CTTAGTTACA
    GTGATCTACC TCACCACTTA AAGTCTTGTC TTTTGTATTT AAGCATTTTC
    CCTGAGGATC ATACAATTAC TAGAGATTTT TTGATATCGA GATGGATCGC
    TGAAGGATTC ATTACTGAAC AACGAGGAGA GAGTTTAGAG GAAGTGGGAG
    AAAAATATTT TAATGAGCTC ATAAATAGGA ATATGGTTCA ATCATTTGAG
    ATTGACCCTT TTAGTAGAAG AGAGGCCTAT CGGATGCATG ATATCATGCT
    TGATCTTATG ATATCTCTGT CTACTGAAGA AAATTTTGCA ACTATACTGG
    ATGGTCAGCA CTGTGCACCA TCATCCAACA AGATTCACCG TTTCTCCCTC
    CAATGTAAAA GTGTGGAAAG GATCACGTGG CTGAGAACCA CTAGTTTTTC
    TCATGCTCGG TCGCTCTCTG TCTTTGGTGA TTTTAACAAG ATACCCCCTC
    TTGTGGACCT TGAAGTTTTA CGAGTACTAG ACCTCTTGAA TTGCTCTAGT
    TTGAAGGATG ATCATATCGA GAATATTGGA AGTTTATTTC AACTGAGGTA
    TGTCAGACTT GGAAATATTA GCAGGATACC AAGGCAAATT GGGAAGCTAA
    AGCTCTTGCA AACACTGGAC CTAAGTGGAA CAGCGGTAAA GAAGTTACCT
    CAATCTATTG TTCAACTGCT CCAATTGGTC CGCCTTTTTC TGCCTTGGCG
    TGTAGAATTG CCAAATGGAA TTGGTAACAT GGAAGCTCTT CAGGTGCTAT
    CAGTGTTCGA TGGCACTGAA AACACATCAG CTATCATTCA AGAGCTCGGT
    AACCTAACCA AACTGAAGGA TCTTGATGTG TACTGGAATT GCAACGACAC
    AGAAAGTGGT CATGAAGTGT ACATCAACCA TTTAGTCAGA TCTCTCTGCA
    AGCTAGGTGG ATTTAACCTT CAGTCTCTTT GTATTCGGAA TATATACCCC
    TGTTCCTTAG ATATCTTGGC TGAATCGTGG TCCCCTCCTC CACGTCATCT
    TCAGACATTT CAGACTGATA TGGGCTGTTA TTTTTCTAGT CTTCCAACAT
    GGATGTCCTC CCTCTCTGAG CTCACCTGCT TAAGAATACA CATGAAGAAG
    GTGGGAGAGG AGGATCTCCA GGTTCTCAAG TGCTTGCCTG CCCTGCTTCG
    TCTCGATCTA TACCCAGGGT ACCCCAAGCA TACTCTCAAA GTTAGCTGCA
    GTGGATTCTC ATGCCTGAAG GAATTTACTT ATGGTCCATC CTATGTTGAT
    CTGGCTTTGA TCTTGCGTCA TCAGTCAACT ATCAAAAATG GACTTGGTAT
    GGGTGTGATG TTTGAAGCAG GGGCTATGCC GAAGCTCCAG CAGCTTGAGT
    TTGGTTTCAA CGCACATGAT ATGGTATCTG CGTATGGAGC TGGACTCGAT
    TTTGGCATCC AGCACTTTGC CTCCCTCAGG CATGTTCGTG TCTTCATCGA
    CTGTAGGGAT GCAAGTGATT GTGAGATGGA GGCTGCACTG GCTGCAACCG
    CTAACTCGGT TTCTCTCCGA GGAAGCTACC ACGTTGAAAT TCGTAGAATT
    TTAAAGAATG TGGAAAATGA TGAGCAGAGC TGACTTGGGA CATCATACAA
    CATGGAACTA AACATAAAGT TTCCAGCCAA AATCGAGATG CCAATATGGT
    TTGGTAATAT ATTAATCTTC CTCTTAAACC GTCTATTGTT ACATTGTTCC
    TTAGCTCTTT CTTTTTCTTG TTTCTGTTTT CAGTTGAAGT AAAATACTAA
    AGTGTTTTGG ATACCC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 9e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NB-ARC 7.3e-64
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2, LRR 0.0000027
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.0000027
    FPrintScan Disease resistance protein 6.5e-18
    FPrintScan Disease resistance protein 6.5e-18
    FPrintScan Disease resistance protein 6.5e-18
    FPrintScan Disease resistance protein 6.5e-18
    Gene3D no description 0.000019
    superfamily L domain-like 2.5e-26
    superfamily P-loop containing nucleoside triphosphate hyd 6.9e-16

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR