K27940

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27940

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27940

Determination of introduced cDNA(s)

J013136J16 - Rice Full-length cDNAs - Original: J013136J16

full reading [+] show sequence

GATCTTCGAA ATGCGGCCCA TGACGAGCCC ACCTCTCCTC TCGCCCTCCT 
CCTCCTCCTC CCGTCTCCTC CTCCTCCGCC TCCTCCTCTC CCGCCGCCGG 
AGCCCCGCCT CGCGCTCCCC TCCTCCTCCC CTCCGCCGCC GCCTCCCTCT 
CCTCGCTGCC TCCATGTCCT CCTCCTCCTC CACCGCCGCC ACCAGAAACC 
CCGGCTCCGT CGTCGCCGAC GCCGACGGCC TCGCCCGCAA GGTCGCCGCC 
ATCCGCGCCG CCGGCCCCGC TAAGCTCCAG GTCATCGCGG ACTTCGACGG 
CACGCTCACG CGGTACTGGT ACGACGGCTC CCGCGGCCAG AGCAGCCATG 
GGTTGCTGAG GCAGGGGAAC GAGGAGTACG ACGCCAAGAG GGAGGAGCTG 
TTCGAGCACT ACCACCCCAT CGAGATCTGC CCCGACATCC CGCTCCCCGA 
GAAGGCCAAG CTCATGGAAG AATGGTGGGA GAAGACACAT GCTCTCCTTA 
TCGAAGGTGG ACTTACATAT GAAGCTATAA GGCAATCTGT GGCTGATGCT 
AAAATCACTT TTAGAGATGG AGTGGTGAAG CTCTTTGAGT TCTTGGAGGA 
GAGAGATATT CCAGTATTAG TATTTTCTGC TGGACTTGCA GACATAATTG 
AGGAGGTCTT CCGGCAGAAA CTCCACAGAT CATTCAAGAA CATTAAGGTT 
GTGTCCAACA GGATGGTCTT CAATGAAGAA GGTCGTCTTG TTTCATTTAA 
AGGAAAGACT ATTCATGTTC TAAACAAAAA TGAGCATGCC TTGGACATGG 
CAGCTCCAGT GCATGACAAT TTGGGTGATC CAAATGGATA TACTGATGAC 
TATTCGTTGG TGAAGAAGAG GACCAATGTG CTTCTCCTTG GAGATCACAT 
TGGCGACCTT GGAATGTCTG ATGGTCTAAA CTATGAAAAC AGGATTGCTG 
TTGGATTTCT GAACAACAAC ATCGAGAAAT CTCTAAAAGA TTACTCCGAG 
GCATTTGATA TTGTCTACTT GAATGACGCG CCAATGGTGG GAGTTGTTGA 
GCTTGTATCT GAACTATGTC CTTAACCAAA TGATGTTTTG CTGAGCTTAG 
AAGCCGCATC CGCCTCCCGC TCTTGCTGAA ATCTGGGAAT CCTATTCCCC 
ACTTCACTAA CCGGCTGGGT TTGTTCAATA AGAAGCAATT TTGTACAGGC 
TTGACATCAA GCAAGCCAAG CAGCCTTTTG AACCAATATC TCCTTAAGCC 
AATCCAAACT TGTATGAAGT CCAGAACACA TTTGTGAAAT GGAATTTCAA 
ATTTGGTTTT GGTCCCC

Gene models with high sequence identity

AT2G38680.1 [+] show detail - 5'-nucleotidases;magnesium ion binding
E-value: 1e-110; Score: 396.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	UMPH-1	1.1e-90
HMMPanther	HAD-superfamily hydrolase, subfamily IE	1e-68
superfamily	HAD-like	8.5e-12

See the detailed result >

AT2G38680.1

Model type: Protein coding
Short Description: 5'-nucleotidases;magnesium ion binding
Computational Description: 5'-nucleotidases;magnesium ion binding; FUNCTIONS IN: magnesium ion binding, 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IE (InterPro:IPR006434); Has 332 Blast hits to 332 proteins in 84 species: Archae - 4; Bacteria - 0; Metazoa - 264; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link: InterPro Scan - TAIR