K27942

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27942

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27942

Determination of introduced cDNA(s)

J033084K24 - Rice Full-length cDNAs - Original: J033084K24

full reading [+] show sequence

GACCCACAAC CAAGAGAAGT AGAAACAAAC AGAGAGCAAT TCTCTTCTCC 
TACCTAGCAA CCTAGTGCAG TGCAGTGCAG TGCAGCGAAG GTTTACTTGG 
CGACTTCCAT GGGTTGCCTG TTGATGCTCT GCTTGGTTTC TCCCCTCCTC 
CTCGCCACCT CTGTCCACGG CAACCCGTGG TATGGGTATG GGTATGGCTT 
GTTCCCGCAG TTCTACGACC ACTCGTGCCC CAAGGCGAAG GAGATCGTGC 
AGTCCATCGT AGCACAGGCG GTGGCCAGGG AGACCAGGAT GGCGGCATCC 
TTGGTCAGGC TGCATTTTCA TGACTGCTTT GTCAAGGGGT GTGACGCGTC 
TGTGCTCCTG GACAACAGCA CCACCATCAT CAGTGAGAAG GGGTCAAACC 
CTAACATGAA CTCCCTCAGG GGTTTCGAGG TCGTCGACGA GATCAAGGCC 
GCCCTCGAAG CAGCTTGCCC CGGCACCGTC TCCTGCGCCG ACATACTCGC 
CCTCGCTGCA CGCGATTCCA CTGTCCTCGT TGGTGGCCCG TACTGGGATG 
TGCCACTTGG CCGGAGGGAC TCACTGGGTG CCAGCATCCA GGGCTCCAAC 
AACGACATCC CAGCTCCCAA CAACACCCTC CCCACCATCA TCACCAAGTT 
CAAGCGCCAG GGCCTTAACA TCGTCGACGT CGTAGCCCTC TCAGGTGGCC 
ACACCATTGG CATGTCTCGG TGCACCAGCT TCCGTCAGAG GCTCTACAAT 
CAGAGCGGCA ATGGCATGGC TGACTACACA CTGGATGTGT CCTACGCGGC 
ACAGCTGAGG CAGGGATGCC CCCGTTCTGG TGGTGACAAC AACCTCTTCC 
CGCTAGACTT TGTCAGCCCC GCAAAGTTCG ACAACTTCTA CTTCAAGAAC 
ATCCTGTCTG GCAAGGGCCT TCTCAGCTCT GATCAGGTCC TGCTTACCAA 
GAGCGCTGAA ACAGCGGCGC TCGTGAAGGC GTATGCTGAT GATGTCAACC 
TCTTCTTCAA GCACTTCGCA CAGTCAATGG TGAATATGGG CAACATCTCG 
CCTCTGACTG GATCACAGGG GGAGATCAGG AAGAACTGCA GGAGGCTCAA 
CAACTACTAC CACTGAGGTT GTCTTGTGTG CTGAGTTTTA CAAGGTGGTG 
GTAGTGGCAT GTTTTGTTTA AATAAGTAAA GCTGGTTGTA ATGCGTCAAG 
GCTGTTTGAT CATTTGTGTT ATTGTGATTG CGTTGCAAAA CGTGTATGTT 
TAATAATTCA ATATATAAAA TGAGTTCATT TGGTTGTTCT

Gene models with high sequence identity

AT5G66390.1 [+] show detail - Peroxidase superfamily protein
E-value: 1e-126; Score: 449.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Plant peroxidase	4.8e-65
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-32
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-32
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-32
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-32
FPrintScan	Haem peroxidase, plant/fungal/bacterial	1.6e-32
PatternScan	Peroxidases heam-ligand binding site	0
PatternScan	Peroxidase, active site	0
HMMPfam	Haem peroxidase, plant/fungal/bacterial	1.5e-75
ProfileScan	Haem peroxidase, plant/fungal/bacterial	80.89
superfamily	Haem peroxidase	2.5e-115
Gene3D	no description	1.4e-63

See the detailed result >

AT5G66390.1

Model type: Protein coding
Short Description: Peroxidase superfamily protein
Computational Description: Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G50990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR