K27944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27944

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27944

Determination of introduced cDNA(s)

J013066C15 - Rice Full-length cDNAs - Original: J013066C15

full reading [+] show sequence

GGGAGGAATC CAGAAGCGGG GGGCTCCCAC CTTGTTGGCG ACGATGCTGC 
GCGCGGGAGG GAGGCGGCTC TTGGCCCCCG GGCTCCGGCG GGTCCTCGGC 
GGCGGGGCGG CCGCTCCGGT GGCCGTGGGC GGGGCGAAGG CGTACCACGA 
GCGGGTGGTG GACCACTACG AGAACCCGCG GAACGTGGGG TCGTTCGAGA 
ACGACGACCC CAGCGTCGGG ACGGGGCTGG TGGGGGCGCC GGCCTGCGGC 
GACGTGATGA AGCTGCAGAT CCGCGTCGAC GAGAGCTCCG GCAAGATCGT 
CGACGCATGC TTCAAGACCT TTGGGTGCGG ATCCGCCATC GCGTCCTCCT 
CCGTCGGTGA GCCCCCCAAC CCCAACTATT CCCCTACCTG TTCCCCCCCA 
CCTTCCCTTG GATGATATGG TTTAGGCTTC GTTTTCGTCT TCGTGAGGTT 
TTCTGTATTT TTCAATTGTT GGGCCATTTG CCAACGATGA GAAATTGTCG 
GAACGTACGA GGAAGGATTG TGATTTGCTT TGTAGTATGA TAGGGAAATT 
CCGGGGGCCA ATTCTGAGTG TGAGATATAG CTACATGAGA TGCTTGTTGA 
AACAGGAAGG CTGTTTGGAT CAGTGTAGGA ATTATAGTAC TAACAGCAAT 
ATTTTTTGTG TCTGTGTCCA ATAGCTGCCT GTGTTTTTTC ACCTTAGAAA 
TCATGTTCAA TTCAAATATA TTCAATGTAA TGTTATCTTG ATTTGGTGCA 
GAGAGTATTA ATACTATGTG TATGTTGTAA ACCTGTGGAG GCAGATGTGG 
TTGATTAATC CTGGGTTTAA TTTGATTGAG TTATGTTAAT TTGGTGGTCT 
AGGGTAGATT TGGTTGATTA ATCCTGGGTT TAATTTGATT TGAGTTATGT 
TAATTTGGTG GTCTAGGGTA GATGTGGTTG ATTAGTCCTG GGTTTAATTT 
GATAAGTATG TTGTTTTGGT GGTCTAGGGC TAAGGTGCTC GTTCTGCTTG 
TCTGGTACAA GCGGTTACTG TTTTCAGATG CTCCCCTCCC CCTAATGATT 
TTCTGTTTTG GTGAGCTTAT ACTTATGGAT TATTTGTCCT AATTAGTAGC 
ATTGAAAGTT TTTACATTTC CCAAGTTGTA TGTCCTAAAC GAAATTTGAC 
ATGATTGGGC CCCACCACTG AACAAACAAC TTGAGAAAGG TGTATTATCG 
GTGAAATACT TTTGATAGTC AGCAGCTCAA ACTGTTCTCA AGATGATCGC 
AATTTTGTGG AAGAAAACAG AAGAGTCTTT ACAGAATTGC TATTTATGTT 
ATGTGCATTA TTCTGTTGTG AGGCGAATTC CTGTATGTAA CTTTATTCAT 
GTTATGTTAC GGCAAATGTC GCCATGATAT GATGCATACT GTATGTATTG 
TTTGCTAGTT ATAAGCCAAA AACTAGAACC AATTGCAGCT TGAGGTTAAT 
ATTAACTTAC TTTAATGCAT TTGCATATTT TCCACATGAA AATCATCATG 
TTCAGATGCC TGGAGTTCAC CCCTGTTCTC AACCAATAGA GTTAACAACA 
TCAGTTGCCC AGCTGGTGGA TTAACTCTTA TGATTGTTCT CTAGAATCTC 
TTTACTATGG AAGATTGTTT GTGCTGAGAA AATTTGGGTC CCAACAACAA 
ATTCAATTCC TGATCCGGCT TTTGTCCTTG CAGCTACTGA ATGGGTAAAG 
GGCAAGCAAA TGGAGGAAGT AGTGACTATA AAAAACACGT AAGCTATTCC 
CCTTCCTGGT TGTTTGCACT GCAATACTCT CAGTGGTTAC ATTAACATGC 
TATGCTTATA TGGCCTTTTG GATGTCATTG AACTACTGTG GTTCGTTATT 
ACCTTGTGGT AATTAAGTTT CTGGCTGGTA TGTGCAATTT CCTTTTCAGA 
CCATACTTTT TCATCAAAAT TTTCAATACT AAATGTCGGT AAAGGGGTTC 
CATCTGTGAG ATTTTCTTTG TCATTCGTTG TCGTAATGAT GACCGTCTTT 
CAGTTAATGC TTCAGCATTT GGACATGTCT GAAGCACTTT GGTAAAATTA 
TTTGATATGC ACTTGACTAA CATGATGTTT CCAGAACTGT TTTGTATAGA 
TCATATTGGT TTTTCTGTAG TTCCTTGGCA GTGGAGTGTG TCATGTGTTT 
GCATTGATTC ATGAACTTAT TTGTGTTTAA TGGATGCATT TTCATTCAGA 
GACTTGATTT GCCTGTTTGC TAAGAGTTGT TTGGCTGCTC ATATTTTCTT 
ATGAATGTAG ATGGTAATCC CATCAGGATA ACCATGCAGC ATACAGTTTA 
GCTTATGCCC TTTGCTTGCA TGGAAGACTA ATATACTTTC CCTTTATTTT 
TACTAATTTT GTATTTTGTC TATCAATAAG TTTGTGTGTG AGGATGCTGT 
CAAATGCTTT CAATCAAGTT CTGTAAGGCT GTAACAGGGT TTTGTGCTCT 
GCTTTGCAGT GAGATTGCCA AGCACTTGTC ACTTCCACCA GTAAAGCTCC 
ATTGTAGCAT GCTTGCTGAG GATGCAATTA AAGCTGCCGT GAAAGACTAT 
GAAGCAAAGA AGGCGAAGCT AGCACAAAAG GGTGAAGAGA AGGCTGCCGA 
AGCATGAGTG CCAGAGGTTC TGTCATGAAG AATGTTGCAG TGCCCTGCGT 
ACTCGTAGTA AAGAACCTGT CATGAAGAAG TCTCTGCTCT GCTTCTTGCT 
GGCGGGAAAT AGTGTGTAAC GCTCACAAAC TCTATGCAGC ATGTATCATA 
AGGATGAAGG CAAACATTTT TGAATAAATG TGCTGTCATC TTGAAAGAAA 
AAAAAAAGGT GTATGCGTGT GTATGGCCTA GTAATGAACA TATGGTACGG 
AATTACGGTC GCGAGATAAG GCACATTGTT TCTCTTTGGT TGTTTCAATT 
AGTCTTAGGT TGAGTTGGTA GATGCTCATG AACTTGAGTT GCCTGGTCAC 
TTGCATCATT TTTCTTTTTT TTTAAAAAAA TAACTGTTTA GTAGTTCTCC 
GTGTTTCTCC ATCCAACAGG AATGCAGAAT AGTTATTGTT TTGAGAGTTC 
TCCT

Gene models with high sequence identity

AT4G22220.1 [+] show detail - SufE/NifU family protein
E-value: 7e-30; Score: 130.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	NIF system FeS cluster assembly, NifU, N-terminal	7.1e-42
HMMPanther	NIF system FeS cluster assembly, NifU, N-terminal	1.9e-08
Coil	coiled-coil	0
HMMPfam	NIF system FeS cluster assembly, NifU, N-terminal	5.7e-10
HMMPfam	NIF system FeS cluster assembly, NifU, N-terminal	2.1e-30
superfamily	SufE/NifU	3.4e-06
superfamily	SufE/NifU	1.2e-24
Gene3D	no description	5.9e-23

See the detailed result >

AT4G22220.1

Model type: Protein coding
Short Description: SufE/NifU family protein
Curator Summary: Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
Computational Description: ISU1; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: ISCU-like 3 (TAIR:AT4G04080.1); Has 5453 Blast hits to 5453 proteins in 1998 species: Archae - 110; Bacteria - 3654; Metazoa - 148; Fungi - 154; Plants - 89; Viruses - 0; Other Eukaryotes - 1298 (source: NCBI BLink).
Link: InterPro Scan - TAIR