K28023

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28023

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28023

Determination of introduced cDNA(s)

  • J013116C12 - Rice Full-length cDNAs - Original: J013116C12

    full reading [+] show sequence

    Nucleotide sequence: J013116C12 - full reading 
    GGGCTGTCTC ATCACTCTGT AACCGATAAG GCTGCCGCCA TTGCTGCTGC 
    TGCTGCTGCT TCCGCCGCGT CGCCTTCTCC GGCGATGGAG GCGGCGGCGG 
    CGATTGGAGG GGCGCGGTCC CCGCTCTCCT TCTCCTCCAG CCTCTGCAAT 
    GCAAAAGTAT CCTGTGGTTT AGCTCTTCAC AATGTGAAGA TCAAGAGCAG 
    TCGAAGGCTT GAGGTGGTTT GCCATGGAAT GTTGACAACC AGAAAGTTCA 
    TGCAGAAGAA GAAGAAAGAG GAGGTATATA AGGATGCTGC TGATGAAGCA 
    GAGCAGAAGA ATTGGAGGAT GATGATGAGG GAGATAGAAG AGTCAGGATC 
    AGCTGTCTCC ATTCTGAAGA CTCAGCGAAG CAAGAAAGAA CCACTGCCAA 
    GGGATGCTGT TCTTGGAACT CTTATGCGGT TCAAACAGCT CAAGAAATGG 
    AACCTGGTCA GCGAGATTCT TGAATGGCTA CGCACACAAC ATTGGTGGAA 
    CTTCAGTGAG ATGGACTTTT TGATGCTTGT TACGGCCTAT GGAAAATTAG 
    GAGATTTTAG CAGAGCGGAG AGGGTCCTGA AGTATATGAA CAAGAAAGGT 
    TACAAACCAA GCGTGATATC TCAGACTGCA CTGATGGAAG CATATGGAAG 
    AGCCAAGCAG TATCGTAAGG CTGAAGCAGT GTTTCGCAGG ATGCAAACAT 
    CAGGCCCTGA GCCATCAGCT GTGACATATC AAATCATTTT GAAATCTTTT 
    GTTGAGGGTG ACAAATACAA GGAAGCTGAA GCTATTTTTG AGGACCTTCT 
    TAATGAGAAA AGAGCTTCTT TTAAGCCTGA CCAGAAGATG TTTCATATGA 
    TGATTTATAT GTACAAGAAA GCTGGCGACT ATGCCCAGGC TCGGAAACTA 
    TTTGCTCAGA TGTCAGAGAG AGGAATCCCT CTATCAACAG TCACCTTTAA 
    TAGTTTGATG TCATTTGAAA CAAATTACAA GGAAGTTTCA AGTATTTATG 
    ATCAGATGCA AAGAACTGCG CTAAAACCAG ATGTTGTGAG CTACTCCCTG 
    CTCATCAAAG CTTATGGAAA AGCTAGAAGG GAAGAAGAAG CATTAGCAGT 
    TTTTGAAGAG ATGCTTGATG CAGGAGTCAG GCCAACACGC AAGTCGTATA 
    ACATTTTGAT TGATGCATTT GCAATATCTG GATTGGTAGA AGAAGCTCAT 
    ACAGTTTTCA AGGCCATGAG AAGACACAGG GTTGAGCCTG ATCTCTGTTC 
    TTACACAACA ATGGTCTTAG CTTATGTGAA TGCTTCTGAC ATGGATGGGG 
    CTGAGAAATT CTTCCGCCGG ATTAAAGAGG ACGGTTTGAA GCCAAATGTT 
    GTTGTTTATG GAACTTTGAT GAAGGGCTAC TCGAAATTAA ATAATGTTGA 
    GAGAGTAATG AGAGTGTACG AGAGAATGCG GATGCAGGGT GTTGAACCCA 
    ATCAGACTAT TTATACTACC ATCATGGATG TGCATGGAAG GAACTCTGAT 
    TTTGGAAATG CTGTCATCTG GTTCAAAGAA ATGGAGGCTC GTGGGTACCC 
    AGCAGACAAG AAAGCAAAGA ATATCCTTCT TTCTCTTGCC AAAACTCCTG 
    AAGAACAAGA AGAAGCGAAT GAATTGACAG GGAATTGTGC AATTCAGCTG 
    GAAGCAAAAC CCGATGGAAC AACATATGGT TTAGAAATAA ATGGTACTGG 
    AAATGAGTAT AAACATGGAC AAAATGATGC TGGGCATGAC AGTTTGTTAG 
    ATGGCGCATG CACCACAAGT AATCGAAATG GTAAAGTCGA GGCTGGGAAA 
    GGTCATTTTG AGGAGGTTAA TGACGATGAT GATGATGATG ATGACGATGA 
    TTACGATGAA GAGTTAAATT TTGTTTCTTT CAAAGATAAG CGAGAACTAA 
    ATTTTGCCAC TTGATGTTTT GATTAATGTA TATCTTTATA TTCCAAACTT 
    GTGATGGCAT TTCCTATACA AAGGTATCCA TGCTGTTTGT GAAATGTCAA 
    ATATAGCTAT TTTTATG

    Gene models with high sequence identity

    1. AT3G59040.2 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 665.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pentatricopeptide repeat 10.172
    ProfileScan Pentatricopeptide repeat 10.468
    ProfileScan Pentatricopeptide repeat 7.914
    ProfileScan Pentatricopeptide repeat 10.391
    ProfileScan Pentatricopeptide repeat 13.504
    ProfileScan Pentatricopeptide repeat 11.323
    ProfileScan Pentatricopeptide repeat 11.104
    ProfileScan Pentatricopeptide repeat 12.233
    ProfileScan Pentatricopeptide repeat 8.835
    superfamily TPR-like 2.2e-28
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4.6e-105
    HMMTigr Pentatricopeptide repeat 0.00012
    HMMTigr Pentatricopeptide repeat 7.1e-07
    HMMTigr Pentatricopeptide repeat 0.057
    HMMTigr Pentatricopeptide repeat 4.6e-06
    HMMTigr Pentatricopeptide repeat 1.3
    HMMTigr Pentatricopeptide repeat 1.1e-09
    HMMTigr Pentatricopeptide repeat 1.5e-08
    HMMTigr Pentatricopeptide repeat 3.5e-07
    HMMTigr Pentatricopeptide repeat 3e-09
    HMMTigr Pentatricopeptide repeat 0.0012
    HMMPfam Pentatricopeptide repeat 0.0087
    HMMPfam Pentatricopeptide repeat 0.00026
    HMMPfam Pentatricopeptide repeat 0.51
    HMMPfam Pentatricopeptide repeat 0.0086
    HMMPfam Pentatricopeptide repeat 1.5e-07
    HMMPfam Pentatricopeptide repeat 2.4e-06
    HMMPfam Pentatricopeptide repeat 0.00013
    HMMPfam Pentatricopeptide repeat 2.5e-05
    HMMPfam Pentatricopeptide repeat 0.0013

    See the detailed result >

    AT3G59040.2

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR