K28030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28030

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28030

Determination of introduced cDNA(s)

  • J013098H22 - Rice Full-length cDNAs - Original: J013098H22

    full reading [+] show sequence

    Nucleotide sequence: J013098H22 - full reading 
    GGCTCTGTAC AAATGTGCTG AGGCTTGGGT TCTAGGCTGG CTTACCTATA 
    GCTAGTTAGC TTACATGATG GCCGCCGGTG GCCACGCTGC CGCGGAGCAC 
    CGCATACAGA TACCAGCTGC CCCGGCGTCG CAGTCGGGAC CAGCTGATCA 
    TAAGGCGGTC GCCGCGGCGC CGGAGAAGTG GCTGAATTAC TTTCTTCGCT 
    TGCTCGCGGT GATCGAAAGC GTGGGCAACG CCTTCGGCAC GCTGGCCTTC 
    ACCTGGGCCA CCGTCGTCCT GCTGGGTGGC TACCCAACCG TTCTCAAGCG 
    CGATTTTGGT ATTGCGACTG CGATAATTTT CCTAGAAGCC ACGAGGATGT 
    TCACCCGCAA CAATAGGCTG GATTATCAAT TGTTCTTCCG GACGAGAGGT 
    GCCTTTAGAC CACTGGGCTG GAACGGGCTG ATGGTAATCG TATTCTTCTC 
    CGTTTCTATG GTGTCCACGG TTGTTTGGGA CGCACGCCGG CCACGTATAG 
    TATTTCCAAT TATGGTAGTA TTGTTTGCGG TTGGCCAGTT TCTATGTGCT 
    GGAGTTCTAG GACTGCGCCT ACGTATCAAC AGTCGGTTAC GCCGTCAGAT 
    GTCGCTGTGG AGCCCCATGG TTGCAATCTT ATTGCTGGCT TCCTGTATTT 
    GCAGAAGCTC GCTACTGGCC ATATGGATAG TATATGGTGT GCTCCTTGTG 
    GTTGTGCTCC TAGTGACTAT TAGCAGGTTG CAATTCCCAA TTATAATCAA 
    CCGAGTACAT GGTGCTTTGG GCCGCAAATA CGTATTTTGG CGCCCATTTA 
    TCCTATACTC GTGCATGCTC GCTGCAATTG TGTTGCCGAT GTTCATGATT 
    GATAAATTAT ATCGATATGC GATCATCGTC CTCGACATAT CTGCCTTGGT 
    CATTGTGTCC TTCGGCAACC TACAGATTCC AGCAGCACTC GTGCGTGTTG 
    TGCTCGCGGC GTTGGGCTTT GATCAAGAGG ACTACGATGG TCACGGTGAC 
    ACGACAAATC TTCCCCAATC TCTAACTATC TTCTATGGGA TGGTGCTTGG 
    ACAAGGACTA CTTTACATCA TTGCCGCAGT ATTGGAGGTC TTCTCGTTCA 
    TCCCTCGGAT ACACCTCGTC CGCCGTGGTG GATTTACAGG TCGATGGGGA 
    GCAGAATCTG TTGATATGTA CTACGCATAC GCCTATGACA AATACATGGA 
    AGGAGGTCTG TTTGCTCCAA AGAGGATCAG CCTCAGCAAC TTTGCCATGG 
    ATTCTCTGAA TTCGGACCTG TCCAAGAATC AGCTATACGG TGTCCAGATG 
    ATGCATATAT TTCTGCAAAA TGGTCTGACC AAGGCACGGT TGCTGGAGAA 
    ACTCACCACT TCAACGCAGA CGATGGCCAG GTTAATCAGC ATGTTGGACT 
    GGAGTAGTAG ACATCATCGT GCAACTATCA GGTTATATGC CGCCAAGGTC 
    ACTGCCGAGC TTGCAAAGAA CCTCCGAGTT GAAACTGTCC CTGGGACACT 
    GCAGCTTGTA TCTACGCTTC TGGATGCTGA TGGAAAGCCA AAAAGAGGAC 
    ACCCACTCCT GGATGCAGAT GATGATCAAG ATCATTTTGT TGATATAGCA 
    GATAGACAAG ATAAAAGACA TGATATAGCT GGTAACCAAG GGCAGAGACG 
    AGAGCCGATT GGGGACACCA ATAACCTGCT GGAAACACCA ACCCGATCAA 
    CACACATCAA CGACCAAAGA TACATACCTA GAATTTGGCA GAGGATACTG 
    GAGTACTGGT CGATTCCCAA GGAGCAGCCA TTGACAGACG ATGATCTCCT 
    CCCTGCACTA GGCATGTCAA TCATTTATAG CCCTTGCTGG CTGTGATCAA 
    AATAATTGTG TGGAAATAGA CAGAGTAACT GATCTGATCC CCAATATAAT 
    TGGATTCACA AGCTTCAGAA GTGCAATGGT AAATTCCGAA GCACAACAGA 
    AGGTTCTCTT AAAGTCATCG TTGAAGGTAC TGCAGAGGCT CACAAGCATT 
    GAAGGGGAAA TTGGCATAAC ACTGCGGTAC AAGATATCAA AACATCCCTT 
    CTTACTGCGA AACCTTGCAG AGATCTTGCG AGACAATAGC AGCAACAAAC 
    AAGAACTAAG GAAGCTCGTG GTAGGAATCC TCAGAAACCT TGCCATTGAC 
    AGACACACAA GGCAAGAGAT GGGACAAATG CAAATGCTCA TTACCACGCT 
    GATCAAGGCA TTCCTCGATT TTAAAGGATT ATTTAGTTCA GATGTTGATT 
    GCTTGCTGCC AAAGGTCGCC GGGCAAGCAT TGGTAATGCT GTCATCAGAA 
    AATTCGCATA ACTGCTTTGT TATGTTGAAG GAACCAGATT TCATTCATAA 
    ACTAAAAAAT ATGATCCTAA TCCATGGTGA TAAATACATA TATGTGGCAG 
    CGAGTCTATT GCGTAATATG TGCCTGTATG CTCAACATGA GCTCACAGAA 
    TCAGACCAAA AGGAACTATC TCACACATTG CGAGAGGTGT TGGAAAGAAT 
    AATGGACACT GAAGGGGCAG AACTAGAAAT CCTCATTGGC CTTAGTTCAC 
    AGATATGCAA ACTCATTCCT GAAGAATTTT CCCAAGAGCT AGAGCATGGA 
    CAGATTAAGC GGAGATTCAT TAAGAGGCTA GTGGACACCC TGAATGCAAA 
    CATGAACCCA AGTTCTCATT GCCCTGGGAT CCGGAGGGTG GTACTTGAGC 
    AATCCATACA CATGATGGAG TACAATTCTC GCTATGCCAA TTATTTCAAT 
    GAATACCAGA TGATGGATGC ACTGTCGTTT GTAGAATTGA CACCCTCAAG 
    GGCTGAGAAT TACATGGTTT TCTTGGGTGA CGCAGGTTTC ATGGAATGTA 
    ACACACCTCT CTCTGCCCTA GTGGACAGGG CAAAAGAACT GATGGGTCGT 
    CAGTGGCTGC AAGGTATCAG CAGTGCCAAC TGAAAAAAAT AAAATGTTTT 
    TGCATATACA GTCAGAAGAC CTTGCATATT GTTAGTGCAG GGCAAACAAA 
    GTGATTCTGC ATTTACAGTC AGAAGACAAC GCATGTTGCT AGAAAGAACA 
    TATATTTACC TTTAAGATGA GCAAAGGGTA TTGTATCTGT ACATCATGAA 
    TCTTGCACTG TAATCTGTGT GCTATTGATG ATTTATCCAA TTATCATTTG 
    TTGAGTGGCC T

    Gene models with high sequence identity

    1. AT5G18980.1 [+] show detail - ARM repeat superfamily protein
      E-value: 1e-23; Score: 109.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G18980.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G06210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR