K28037

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28037

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28037

Determination of introduced cDNA(s)

  • J013001A09 - Rice Full-length cDNAs - Original: J013001A09

    full reading [+] show sequence

    Nucleotide sequence: J013001A09 - full reading 
    GGCTAAGTAA GTAAGAATTG TGGTTGCCAC TCGGCACTCG CCACCATGCT 
    CCTCGTCGGC GTCCTCCTGC TGCTCTTCTT CAACCTACAT CTCCCCACGG 
    CCGCCATTGA CACCCTCACG CTAGGCCAGT CTCTGCTGTG GAACCAGACG 
    CTGGTCTCCA ATGGCGGCAA CTTCGAGCTC GGCCTCTTCT CGCCGGGAAA 
    GTCCAACAAG CACTACCTTG GCATCTGGTA CAAGAAGATC TCCAAGAAGA 
    CGGTTGTTTG GGTTGCCAAC CGTGAGCGCC CGATTCTTGA GCCGTCGAGC 
    TGCCACCTCG AGCTGAGCGT CCACGGCGAT CTGCGGCTGT TCTCGACGGC 
    GCCGTCGAAC ACCTTGCTGT GGTCGTCGAA CGCGTCCGCG TCTTCCTCGC 
    CGTCGCCCCC GCGCACCACC GTCGCCACGC TCCAGGACGA CGGCAACCTC 
    GTGGTGAACA GCAACGCGAC GCGGTCGCGG TCGCGATCGC CGTCGTCGAC 
    TACGACGACG CACGTGGCGT GGCAGAGCTT TGATCACCCG ACCGACACAT 
    GGCTCCCCGG AGCCAGGCTC GGCTACGACA GGGGCCGCGG CGTCCACAGC 
    TTCCTCACGT CGTGGACGGA CTCCGAGAAC CCGGCGCCCG GCGCGTTCTC 
    CATGGTGATC GACGCGCGCG GGCTGGCCAA GTTCGACCTC CTCGCCGGCG 
    GTGAGCACCG GTACTGGACG ACCGGCCTCT GGGACGGCGA GATCTTCGCG 
    AACGTGCCGG AGATGCGGTC CGGCTACTTC ACCGGCGTCC CCTACGCGCC 
    GAACGCCAGC GTCAACTTCT TCAGCTACCG CGACCGGCTG CCGGGCGCCG 
    TCGGCAACTT CATGCTGGAC GTGAACGGGC AGATGCGGCG GCGGCAGTGG 
    AGCGAGACGG CGGGGAAGTG GATCCTCTTC TGCTCGTTGC CCCACGACGC 
    GTGCGACGTG TACGGCTCGT GCGGGCCCTT TGGAGTCTGC AGCAACGCCA 
    CCAACCCGGA GTGCCGGTGC CCCGCCGGCT TCGAGCCGCG GTCGTCGGAG 
    GAGTGGAGGC TGGAGAACGC CGCCGGAGGC TGCGTGAGGC GGCACCCTCT 
    CGAGTGTCAC GGAGACGGGT TCCTGGCGCT GCCGTACACC GTGCGGCTCC 
    CGAATGGCTC CGTGGAGGCG CCGGCCGGAG CTGGGAACGA CAAGGCGTGC 
    GCGCACACCT GCCTGGTCGA CTGCTCCTGC ACGGCCTACG TTCACGACGG 
    AGCGAAGTGC CTCGTGTGGA ACGGCGAGCT CGTCAACATG AAAGCCTACG 
    CGGCTAATGA GAATGGCCAA GGCGATCCTG GCCTCGCCGG AGCGGTGCTT 
    CACCTCCGTG TCGCCCACTC GGAGGTTCCG GCGTCGTCGA CGGAGCACTC 
    GTGGAAGAAA TCGATGGTAA TCCTTGGAAG CGTCGTTGCG GCGGTGGTGC 
    TGCTCTTGGC GAGCCTCGTC ACCGTGGTGG CGGTGGCGGC GGTGTTGCGG 
    ATGCGGCGTA GGAGGGGCAA GGTGACGGCG GTGCAGGGGT CGCTGCTGCT 
    GCTCGACTAC CATGCCGTGA AGACCGCGAC GAGGGACTTC TCGGAGAAGC 
    TCGGGAGCGG GAGCTTCGGC ACGGTGTTCA AAGGCGCGCT GCCGGACGGG 
    ACGCCCGTGG CCGTCAAGAA GCTCGACGGT CTCCGGCAAG GCGAGAAGCA 
    ATTCAGAACG GAGGTGGTGA CGCTCGGCAT GATCCAGCAC GTCAACCTCG 
    TCCGACTCCG TGGCTTCTGC TGCGAGGGAA ACAAGAGGGC GCTCGTGTAC 
    GACTACATGG CCAATGGCTC GCTGGACTCG CACCTGTTCG TCATGAGCGG 
    CTCCAGCTCC GGCCCCGACT CCAAGCAGGT GACCCTGACT TGGAGCCAAC 
    GGTACAACGT CGCGGTTGGT GTGGCACGGG GCTTGGCTTA CCTGCACGAG 
    AAGTGCAGGG AGTGCATCAT ACACTGCGAC GTCAAGCCGG AGAACATCCT 
    CCTCGATCAG GAGATGGCGG CGAGGCTCGC GGACTTCGGC ATGGCCAAGC 
    TCGTCGGCCG CGACTTCAGC AGCGTCCTGA CCACCATGCG GGGCACGGTG 
    GGATACCTCG CGCCGGAGTG GCTAGCCGGC ACGCCGGTCA CCGCAAAAGC 
    CGACGTGTAC AGCTTCGGGC TCCTGCTCTT CGAGCTCGTC TCGGGCCGGC 
    GGAACAGCAC CGCGCCGTCG TCGTCGTCGG AGGGCGGCCC TGGGATTTAC 
    TTCCCGGTTC ATGCCGTGGT CAAGCTAAAC GAAGGCGACG TGGCCGGGCT 
    GGTCGACGAG AGGGTGGCCA AGGATGCCGA CCCGAAGGAG GTTGAGAGAC 
    TCTGCAAGGT CGCGGGCTGG TGCATTCAAG ACGAGGAAGG CGACCGGCCG 
    ACCATGGGGC TCGTCGTGCA GCAGCTCGAA GGCATCGCCA ACGTAATGTT 
    GCCGCCGATC CCTTCTCGGC TTCATATCCT GGCGATTGAG AACGAATGGG 
    TCAGAGGTGT TCCAGGGGAT GAGCGCTGCT CAAAGAGCGG TAGTAAACCA 
    GAAACAGAAG CAATAGAAGA AATGTAGAAC TGAAAAGAAT CTGGGAGCAC 
    CCTACAGCTG AAGTGAAGAT GCAGCGTCAG ATATGAAAAT GTAGTTGTAA 
    TGTCAGCATA GTTGATATTT CCCGTGTGGA TGTATAGCCA GTACTGTACT 
    GCAACTGTTC TGTAGATTCC TTAAATTCCG GAAACAGGAT CAGACAAGTA 
    CCTTCTCTCG TTTTGTTCCC

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 0; Score: 645.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 6.2e-74
    superfamily Curculin-like (mannose-binding) lectin 1.2e-24
    HMMSmart Curculin-like (mannose-binding) lectin 1.9e-32
    HMMSmart Serine/threonine-protein kinase domain 1.4e-31
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.7e-25
    ProfileScan Protein kinase, catalytic domain 36.753
    ProfileScan EGF-like, type 3 10.871
    ProfileScan Curculin-like (mannose-binding) lectin 18.336
    ProfileScan Apple-like 7.974
    Gene3D no description 2.3e-21
    Gene3D no description 9.4e-47
    HMMPfam Serine/threonine-protein kinase-like domain 2.3e-45
    HMMPfam Curculin-like (mannose-binding) lectin 9.5e-31
    HMMPfam S-locus glycoprotein 3.4e-25
    HMMPfam PAN-2 domain 3.1e-14
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPanther S-RECEPTOR KINASE 2.6e-178
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.6e-178

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR