K28040

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28040

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28040

Determination of introduced cDNA(s)

  • J023061H06 - Rice Full-length cDNAs - Original: J023061H06

    full reading [+] show sequence

    Nucleotide sequence: J023061H06 - full reading
    GACTCCTCGT CCCCTCCTCC ACTTCCACTT CCACACTGCT CTCCCCCTCC 
    CCTTCCTCCC GCTCCGGCGA AGGCGAGCGC GCGGATCGGC GTGATGGCGG
    CGGCGGCGCC CTCTCCCCCA CCCGTCGCGG CGCTGGAGCA GATGAGCAGG
    ACCAAAATGT TCGGCGGCCA CAACCTCCGC TTCCGCCACC ACAGCGCCAC
    GCTCGGCTGC CCCATGACCT TCTCCGTCTT CCTCCCGCCG TCGCCGGCAT
    CCGACCTCCC CGTGCTGTAC TGGCTCTCCG GCCTCACGTG CAACGACGAG
    AACTTCGTCA CCAAGGCCGG CGCGCAGCGC GCCGCCGCCG CCCACGGCAT
    CGCCCTCGTC GCCCCCGACA CCTCCCCACG TGGGCTTAAT ATAGAGGGAG
    AGGCAGACAG TTGGGATTTT GGTGTTGGTG CTGGATTCTA TTTGAATGCA
    ACAAATGAAA AGTGGAAAAA TTGGCGCATG TATGACTATG TTGTGAAGGA
    GCTTCCAAAA GTTTTAAGTG ACAACTTTGA ACAGCTGAAC ACTTCACGGG
    CATCTATTTT TGGGCACTCA ATGGGAGGGC ACGGTGCACT AACAATCTAC
    TTAAAGAACA CTGATAAATA CAAGTCGGTG TCTGCATTCT CTCCGGTTGT
    CAATCCAATC AACTGCCCTT GGGGTCAGAA AGCATTCTCA AACTATTTGG
    GCCCAGCTAA ATCAGATTGG AAGGAATATG ATGCAACCTG CCTGATCAAG
    AAGTGCAACA AAATTTCAAC TCCTATTCTG ATTGACCAGG GAGAGGATGA
    CAAATTTCTG GCAAAGCAGC TTCTACCTCG CAACTTTGAG GAGGCGTGCA
    AGGCTGTGGG AGCTCCTTTG ACTCTCCGCA TGCAACCTGG ATACGACCAC
    TCCTACTTTT TTATTGCTAC ATTCATTGAT GATCACATTG CTCACCACTC
    TCAATTTCTG AAGAGTGCCT GACTACCAAG CCACATGTAA TTGAAGCAAT
    GGAGAGACAG GGGAGGCTTT CAATCTTTCT ACTTACTATG CCCTAGCATT
    ATTTCTCAGC CCGGACAATG TCAGGTGCCT TTGATAGCCT GAGTCGAACA
    GTATCTCCAG CTGGATATAA GATGAATGAT TTGGTTTTGC AGGCTATTCA
    AGTACAGTAT AATTGGATCC

    Gene models with high sequence identity

    1. AT2G41530.1 [+] show detail - S-formylglutathione hydrolase
      E-value: 5e-117; Score: 417.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Putative esterase 3.4e-57
    HMMPanther S-formylglutathione hydrolase 1.1e-169
    Gene3D no description 1.5e-56
    HMMTigr S-formylglutathione hydrolase 9.1e-155
    superfamily alpha/beta-Hydrolases 2.2e-77

    See the detailed result >

    AT2G41530.1

    Model type
    Protein coding
    Short Description
    S-formylglutathione hydrolase
    Curator Summary
    Encodes a protein with S-formylglutathione hydrolase activity.
    Computational Description
    S-formylglutathione hydrolase (SFGH); FUNCTIONS IN: hydrolase activity, acting on ester bonds, S-formylglutathione hydrolase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative esterase (InterPro:IPR000801), S-formylglutathione hydrolase (InterPro:IPR014186); Has 3295 Blast hits to 3294 proteins in 1269 species: Archae - 2; Bacteria - 2478; Metazoa - 258; Fungi - 146; Plants - 60; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR