K28044

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28044

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28044

Determination of introduced cDNA(s)

  • J013000A03 - Rice Full-length cDNAs - Original: J013000A03

    full reading [+] show sequence

    Nucleotide sequence: J013000A03 - full reading 
    GGGGTGTACA CATCATCCTC ATCAATGAGT AGAGAGAAGA GTAGAGGGTA 
    GTAGAGAGCC AAAAAAAATC GATCATGGAG AGGCCATGTG GAGCTCGCCA 
    AGTGTGAGCA TTTACCTTCT TGGAAAGAAT CCCAAGCTAG AAATCCACAG 
    AATTATCTGC TCTCAAACAT TGGCTCATCT GCTCAACAAT CCTATCCTCC 
    TCCTCCTCCT CACTGGCAGT GATTCCCCCA ACCCCATTTC TCTCTGAATT 
    GGGCTTGTTT CTTTGCTGAA TTATTATTTT GCTCATTCCA CTCTGGTTGC 
    TTGTTCAGAG ACTCCATGTA CAATTAGTTG ACCATTCTTC TAGTTAGCTT 
    CTCTTGTGTT CTTGGAGTTG GAGCTGGTCT GTCCATGTGA GCCATGTTGC 
    AGATTGGGCT AGCTTTGGGA GCAAGAGAGT GGTAGATCTT CTTCTTGCCA 
    GATTTATTGT AGATACAATA CAATCCCATT TCTTGTTCAG ATTTCTTGGT 
    GAAAATTCCT AGCTAGATCC ATACTTTCTC CAGTGTAGTG TGTAGAGAAG 
    AAGAGGCCTT GTGAATCTTA TCTTGGGAAA AAGAGGTATA TCCATCCACC 
    CATCTGTGTG CTGTTCTTGA TTGGCGGCAA TGGCGATGGA GCCGACGGTG 
    AAGGTGGCGC TGGGGACGGC GGCGTTCGGG ATCTTCTGGG TGCTGGCGGT 
    GTTCCCGGCG GTGCCATTCC TGCCGATCGG GAGGACGGCG GGGTCGCTGC 
    TGGGCGCGAT GCTGATGGTG CTGTTCGGCG TGATGTCCGC CGACGAGGCG 
    TACGCCGCCG TGGACCTCCC CATCCTCGGC CTCCTGTTCG GCACCATGGT 
    GGTGAGCGTC TACCTGGAGC GCGCCGACAT GTTCAAGCAC CTCGGGAGGC 
    TGCTGTCATG GCGGAGCCAG GGCGGCAAGG ACCTGCTCGT CCGCACCTGC 
    GTCGTGGCGG CGCTCGCGTC GGCGCTCTTC ACCAACGACA CCTGCTGCGT 
    CGTGCTCACC GAGTTCATCC TCAAGATCGC GCGGCAGAAC AACCTCCCGC 
    CCAAGCCGTT CCTCCTGGCG CTCGCGTCCA GCGCCAACAT CGGCTCCGCC 
    GCGACGCCCA TCGGCAACCC GCAGAACCTG GTCATCGCCG TCCAGAGCGG 
    CATCTCCTTC GGCCAGTTCG TGTTCGGCAT CCTCCCGGCC ACCCTCGTCG 
    GCGCCGTCGT CAACGCCGCC ATCCTGCTCT GCCTCTACTG GCGCCACCTC 
    TCCGACGAGA AGTGCGTCGA GGTCGTCGCC CCGGTCCCCA CCGACGTCGT 
    CGAAGAGGAG GACGTCACCT CCCACCGCTT CTCGCCGGCG ACCATGTCAC 
    ACCCCCGTTC CTCCTCCCAC CACCACCACC ACCAGCAGCC TGGCAGCTCG 
    CTGTCGTCGC CTGACTGCGA GGTGTTCGAG CCAGTGAAGC CCGTCCCTGT 
    CACCAGCAAT GGCGACTCCA ACAACAAGCC GGACGCCGCC GACGCCGCCG 
    TCGTCGTCGG GATCCACCAG AGGCGCGGCG GCGTCGGCGG CGGCGTGAGG 
    ATGAAGGAGG AACATGCGTT CCGGTGGGTG GAGGAGAAGG AGGAGGCCAT 
    GGAGCAATGG AAGAGCACGG TGTGGAAGAC GGGTGTGTAC GTCATCACAT 
    TGAGCATGCT GGTGGCGCTG CTGTTGGGTC TCAACATGTC ATGGAGCGCC 
    ATCACCGCCG CACTCGCCCT CATCGTCCTC GACTTCAAGG ATGCCCGCCC 
    CTGCCTCGAG AAGGTTTCCT ATCCACTTCT ACTCTTCTTC TGTGGGATGT 
    TCATCACTGT GGATGGATTC AACAAGACGG GCATTCCTAG CGCATTCTGG 
    GAATTCATGG AGCCCTATGC ACGGATCGAT ACACCGACCG GGATAGTAAT 
    CCTCGCCCTG GTTATTCTTC TCCTCTCAAA TGTGGCGTCA AATGTTCCAA 
    CTGTTCTCCT GCTTGGTGCT CGGGTGGCAG CGTCAGCAGC GGCCATCTCC 
    CCTGCAGCAG AGACCAATGC CTGGCTCATC CTGGCCTGGG TCAGCACGGT 
    GGCCGGCAAC CTCTCCCTCC TTGGCTCCGC CGCGAACTTG ATCGTTTGCG 
    AGCAAGCTCG CAGGTCGGAG CAGTACGGAT ACACCCTCTC CTTCTTCAGC 
    CACCTCCAGT TCGGCTTCCC GGCGACGCTC ATCGTCACCG GGATTGGCCT 
    ACTGCTCATC AGAAGCAACT GAAAAATGGT ACAGAACATA TATATGAAGA 
    AGACATGGAT ATCAGGACAT GTACAAAAAG AATGTGAATT TTCAGGTCAG 
    GTCGATTGTA TTTCTGCAAA GATTCAATTG TGGGATAAAA GAAAAATGTC 
    TATCTTTGCC TCGGAATTAA GCACGGATAT CATGGTGCTT GGAGGCTTTT 
    TGAGCTGTAC ATTTGTTAGT TCATATTGGG GGGAGAAGAT GTATATGTTG 
    CAGTAGCAAG GATCATAAAA GGGAAATGTA TATTTTTGTT CAGCATTCTA 
    CTTGTAATCC ATATATATTT TTTGAAGTCG AATAATTTGT ATAGGCAGGA 
    GAAGAGAAAA TCAATGAAAT GCATGCCCCT ATCGATGC

    Gene models with high sequence identity

    1. AT1G02260.1 [+] show detail - Divalent ion symporter
      E-value: 1e-152; Score: 537.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ARSENITE TRANSPORT PROTEIN 1.1e-231
    HMMPanther CATION TRANSPORTER RELATED 1.1e-231
    HMMPfam Divalent ion symporter 2.5e-96

    See the detailed result >

    AT1G02260.1

    Model type
    Protein coding
    Short Description
    Divalent ion symporter
    Computational Description
    Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR