K28101

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28101

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28101

Determination of introduced cDNA(s)

  • J013065E05 - Rice Full-length cDNAs - Original: J013065E05

    full reading [+] show sequence

    Nucleotide sequence: J013065E05 - full reading 
    GGGTCCAACT CGGCTCATCC TGCTGCTCCG CCCTTCTCAA GATCACCAAG 
    CAGCCGCAGT AGCTCGGCGA GCCGGCAGCC GACGGGTCCA ATGGCGCAGG 
    ATGATTCGGT TGTTTCTGCT CAGTGGCTGC ATGAGCACTT AGGGCAGCCT 
    GATGTTAAGG TGCTGGATGC TTCCTGGTAC ATGCCTGTAG AGAAGAGGGA 
    TCCATGGCAA GAATACCAGG TGGCCCATAT CCCTGGTGCG CTGTTCTTCG 
    ACATAGATGG CATAGTTGAC CTGACAACTG ATTTGCCACA CATGCTGCCA 
    TCACAAGAGG CTTTTGCAGC CGCAGTTTCT GCGCTCGATA TAAAAAACCA 
    TGATAAAGTT ATTGTTTATG ATGGAAAGGG ATTTTTCAGT GCACCTCGTG 
    TATGGTGGAT GTTCAGAGTT TATGGACACA ATAAAATTTG GGTGTTAGAT 
    GGAGGTTTAC CTCAGTGGCG AACTTCTGGA TTTGTTCTTG AGAGTAGCAC 
    CCCTGGTGAT GCAGTTCAGA AAACTAAAGC TGCTAACAGT GTTGTTGAAA 
    GGATTTATAA TGGTCAACTG GCAAGTGATG TAACATTTCA GACTGAATTT 
    CAGCCTCATA TATTCTGGAC ACTAGAAAAG GTTAAACATA ACATGGATGC 
    ACAGTCTCAC CAAGTCGTTG ATGCCCGATC AAAGGGCAGA TTTGATGGTG 
    TAGCACCAGA ACCACGGGAA GGAGTAAGAA GTGGACATAT CCCAGGGACA 
    AAATGTGTTC CATTCCTTGA GATGTTTGAT GATGCACCAA TGCTTCTCCC 
    TGCAGATGAG ATCCGTAAAA AGTTTGAGCA AGCAGGGATA TCCCTTGATC 
    GCCCCATTGT AGTCACTTGT GGATCTGGTG TAACTGCCTG CATACTTGCT 
    TTGGGACTCT ATAGAATTGG GAAGCAAGAT ATTCCAGTTT ATGATGGATC 
    TTGGACAGAA TGGGAAGCTC TACCGGATCA TGATTATCCA AAAGTTACCT 
    CCAATGGTTC TTAAAATCAT CAGCTCCGAA ATGATGGATT CATCTGCTGC 
    ATTTTTCACC ATTCAGTTTA GATTGTCAGC TGGACTGTGT TCTCTTTGAC 
    ATGCTTAGCG TTTGAATCAA AAGGAAGCGG AAATGTGCAC TCTTGGCAAT 
    TTTGATGAGG CCATATTCAA TATTAAACTT AGATCGATGA TGTACTGAAT 
    GTTATCGTTA AACAATAATA AGCATACCAA TTGATTTTAT ACC

    Gene models with high sequence identity

    1. AT1G79230.3 [+] show detail - mercaptopyruvate sulfurtransferase 1
      E-value: 2e-122; Score: 436.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Rhodanese-like 1.4e-22
    HMMSmart Rhodanese-like 2.5e-19
    superfamily Rhodanese-like 2.4e-40
    superfamily Rhodanese-like 4.3e-38
    HMMPanther THIOSULFATE SULFERTANSFERASE 4.4e-105
    HMMPfam Rhodanese-like 1.8e-16
    HMMPfam Rhodanese-like 2.6e-14
    Gene3D Rhodanese-like 1.2e-41
    Gene3D Rhodanese-like 4.2e-36
    ProfileScan Rhodanese-like 20.637
    ProfileScan Rhodanese-like 19.988
    PatternScan Thiosulphate sulfurtransferase, conserved site 0

    See the detailed result >

    AT1G79230.3

    Model type
    Protein coding
    Short Description
    mercaptopyruvate sulfurtransferase 1
    Curator Summary
    encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification.
    Computational Description
    mercaptopyruvate sulfurtransferase 1 (MST1); FUNCTIONS IN: 3-mercaptopyruvate sulfurtransferase activity, sulfurtransferase activity, thiosulfate sulfurtransferase activity; INVOLVED IN: sulfate transport, aging; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Thiosulphate sulfurtransferase, conserved site (InterPro:IPR001307); BEST Arabidopsis thaliana protein match is: rhodanese homologue 2 (TAIR:AT1G16460.2); Has 6251 Blast hits to 6226 proteins in 1459 species: Archae - 162; Bacteria - 3623; Metazoa - 283; Fungi - 152; Plants - 95; Viruses - 0; Other Eukaryotes - 1936 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR