K28107

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28107

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28107

Determination of introduced cDNA(s)

  • J013041G12 - Rice Full-length cDNAs - Original: J013041G12

    full reading [+] show sequence

    Nucleotide sequence: J013041G12 - full reading
    GATATACACA CCGGGCCACC GGCCGGTAGG GAGTTCTCGC GGTTTTGTCG 
    TTCGATCGAT CGATCGTGTC CATGCTGCTC CGGCTGAAGG CCGTCGCCGT
    CCATCCGGCG GCGCTCCTTG GGCGACCGCG CAGCCATGAC GCACCCCAGC
    TCGTCGGTCG CACGGGCGCG TCGACGACGA CGGCGAGGCG GAGGGCGGCG
    AGGAGCGCCG TGACGGTGAC GATGGCGCTC AAGGAGGAGC CGGAAGGCAG
    CCGTAGCGGC TTCGCCGGCG GCGTTCCGAG CTGGGACCCC GGGCTGGAGA
    TCCAAGTCCC TTTCGAGCAA AGACCGGTGA ACGAGTACTC CGCCCTCAAG
    GATAGCGTAC TCTACTCGTG GGCAGAGCTG AGCCCGGGGT CATTCTTCCT
    GCGCCTAGGC AGCCTGTGGC TGATCACCTT CACGGTGCTC GCCGCGCCCA
    TTGCAGCTGC AAGTTTCAGT CCAGGAAAGG ATCCACTCAA ATTCGTGCTA
    GCAGCTGGGA TTGGAACTCT GCTCCTCGTC TCTTTGGTCG TTCTCCGGAT
    TTATCTGGGT TGGAGCTACG TTGGTGATAG GCTGTTGTCG GCGGTTGTGC
    CGTACGAAGA AACCGGATGG TACGACGGCC AAATGCGGGT CAAGCCACCA
    GAGGTATTGG CTCGTGACAG GCTCTTGGGA TCTTACAAGG TAAAGCCGGT
    GATTAACCTG CTGAAGCAGA CGCTGGTGGG CACCGGCGCT CTGCTGGTCG
    GCGCGGTGTC GCTGTTCGCG TTCGCGGCCC CCGTCGAGGA CTTCCTGCAC
    TCCGTGAACG CACCACCATC CGCTGCCTCC TCCAAGCCCA GTCTCAGAAG
    GGAGGAGCTG CTGCGTCTGC CCGTGGAGGT GAGGCAAGAC GACGACCTCG
    CCGCTGCCGC CGCGGAGGCC GCCGACGGAC GGCCGGTCTA CTGCAGGGAC
    CGCTACTACC GGGCGCTCGC CGGCGGGCAG TACTGCAAGT GGGACGACCT
    GCTCAACTGA CAAAATACTT CTGTATTACC CAACGGATAC GGTGTGCAGT
    GTGTCCTGAA TCCTGATATA TGCAGATTGG CATGCGAAGC CTCCGCAACT
    GTGTAATCGG AACGAAATTT TGTGACCATT GGTTGCGTTA AGGGACAGAT
    AGATAAATGC TTAATTTATT GGATGTTTGA TCGACGCAAC ATTTGC

    Gene models with high sequence identity

    1. AT5G67370.1 [+] show detail - Protein of unknown function (DUF1230)
      E-value: 2e-87; Score: 319.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Protein of unknown function DUF1230 2e-81
    HMMPfam Protein of unknown function DUF1230 8.4e-54

    See the detailed result >

    AT5G67370.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1230)
    Computational Description
    Protein of unknown function (DUF1230); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1230 (InterPro:IPR009631); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1230) (TAIR:AT5G11840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR