K28115

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28115

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28115

Determination of introduced cDNA(s)

  • J033051K11 - Rice Full-length cDNAs - Original: J033051K11

    full reading [+] show sequence

    Nucleotide sequence: J033051K11 - full reading 
    GACTGCCCAC TCTCCTCCTT CTCCGGCCGC CGCCGCCATC GCCGCCGGCC 
    GTAGCATGGT TCTTGCTTGA CTGACCTGAA TAAACAGTAG GGGTGATGTC 
    GATGGAGGAG GCGGAGGAGT GCTCGGCGGC GTGCGGCTTC TCGCTGACGT 
    GCCAAGAAGA CGGCGCCGAC CTCGGCGACG GCGTGGTCGA CGACGACGAC 
    GACGGCGACG TATTCTTGTT CTACAATGCC GTTGCGGCGG CGGACGACGA 
    GAAGGAGGAG GAGGAGTACG TGGAGCAGAT GGTCTCCAAG GAGGCTAGCT 
    TCTGCTGCTC CTCTTCTTCC TCCCTCTTCG ACGCCGCCGC CGGCGACGGC 
    TACGGCGACG GCGACGGCGA CGGGGACTGG TTCCGGCAAG CCCGCCTCGC 
    CGCTGTCAAG TGGATCCTCG AAACGAGGGG GTACTTCGGG TTCGGCCACC 
    GGACGGCGTA CCTCGCCATC GCCTACTTCG ACCGCTTCTG CCTCCGGCGA 
    CGCGTCGATA GGGAGGCGAT GCCGTGGGCG GCGCGGCTGC TGTCTATCGC 
    GTGCGTGTCC GTGGCGGCGA AGATGGAGGA GTACCAGTCG CCGGCGCTGT 
    CGGAGTTCGA CGCCGGCGGC GGCCGCGTGT TCTGCTCGGA CTCCATCCGC 
    CGGATGGAGC TGCTCGTGCT GTCCACGCTG GGGTGGCGCA TGGGCGCCGT 
    CACGCCATTC GACTTCCTCC CCTGCTTCTC CTCCCGCCTC CACCGCCACC 
    ACCACGGCGG CGCCGGCGCC GCCGGCCATG GCGCCGCCGC CGCCGCCCGC 
    GTTGCCCTCA ACGCCGTCGG CTTCATCTTT GCCACAGCTG AAGCTGGAAG 
    TGTGCTAGAT TACAGGCCAT CAACTGTTGC TGCAGCTGCA ATCTTGGCTG 
    CATCCTATGG AGCTCCACTG ACAAAAGAAG CATTGGAGTC CAAGATGAGC 
    AACCTTTCTC CATCTTGTCT TATTGACAAG GAGAATGTAC ATGCCTGCTA 
    CAGTATGATG GTTGGGGACA TGAACAACAA CAGGAGGAGC AGCAAGCGAC 
    CATTGCAATG TTCAGACTCC AATGAGATTA CCACCACCAG TACATATGAT 
    TCTGTTCTTG TTGATGATGT TACCGACACC GCCGCCTTCG CTGCGACGGC 
    GATGAATAAG CGGCTCAGGC CAGAGCCGCC GCGAATCCGT TGAGGAAGCT 
    AGCACCACCA GGGACACACA ATTTTTAGTC AGATGTCTAG GGGGCGCTTG 
    GTTTGGATCT TCTCCTTTTC CCCTTCTTTT TTTCTCCCTT TTTTTGACAT 
    AAGTTTCCAA AATATTTATT AGGTTCTTTG AGCCATTGCC ATTGGTTGGC 
    ATTTGGCAAA TGTTGTTGGA TTGGATTGGT TTGGTTTGTG AGAAGGAGAA 
    GAGATAATGA ACAAAGGAAA AAAGGGGCTG AGTGAGCTCT CCTAAGGAGA 
    GGAGAGCTTG AGTTACTTGA AGCCCCAAAT TCCAGTGCCC AAATGGAGCA 
    CATTTCCTCT

    Gene models with high sequence identity

    1. AT4G37630.2 [+] show detail - cyclin d5;1
      E-value: 4e-27; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cyclin, N-terminal 1.6e-21
    HMMPfam Cyclin, C-terminal 8.1e-08
    HMMSmart Cyclin 2.1e-05
    superfamily Cyclin-like 1.4e-24
    PatternScan Cyclin, N-terminal 0
    Gene3D Cyclin-related 9.5e-23
    HMMPanther Cyclin D 3.5e-48
    HMMPanther CYCLINS 3.5e-48

    See the detailed result >

    AT4G37630.2

    Model type
    Protein coding
    Short Description
    cyclin d5;1
    Curator Summary
    core cell cycle genes
    Computational Description
    cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D1;1 (TAIR:AT1G70210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR