K28122

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28122

Determination of introduced cDNA(s)

J033132B14 - Rice Full-length cDNAs - Original: J033132B14

full reading [+] show sequence

GATTTCTATT CCCCTGCGCC CCCACACCGA AAATTCTCTG TCGCGCGCGC 
TCCTTCCTCC CGTCTCCTCT CCTCTCCTCC GCTCCTCGCG CGCGCCATCT 
CGCGGAGGGG ATCCTGATCT GCAAGAAGTT CTTCTCTTAA TTTCAGAGCC 
TTAATAACAG TTTGAGTTTG TTTGTTCCCC CGCAAAAAAG AGTTTGGGGG 
GGTTCAATTG AAGTTGGATC CGCCGCCCCT GCAGATTTGG TCGCCTAGCT 
TCCTTACCTA TGGCGGTTCA ATCTGCAGAG CGCGGCGTGG AGGCTCCACC 
TCTGACGCTG TCGATATTCG AGTTCAACAG TAAGGTTGTG TGTGTGTGCG 
CCTCCGGTGA CGGTGATGCC GCCCGCCGCC TGTTGATCCG GTTCAATGCT 
TTTTGTTGAT GCGAGCGAGT ATGGGAATTC TTCGTGTCTG ATATTGGGTG 
TGCGCGCGCG CCTTGCTCTG CAGGTGATGC AGGACGAGCT GCAGAAGCTG 
GCGCTCAAGG TGAACCACCA CGAGGAGAAC ATCAGGTTTC TCAAGTCGGA 
GCTCAATGCC GTCGAGGACT CGTGCGCTGA CCTGGGCATT AAAATAGGCA 
ATTATTATTC ATCGATGGCG GCAATTGCAA ATAATGACAC ATCTGTTGAA 
GAAGCTGAAC AACGCACTAT TCAAAGTATA CTCAAACAGG ACGAGACAGC 
AGCTGGGATT ATATGCCAAC TGAAGATTCG TCATTATCAG CATGCATCAA 
AGCTGCCACT GATGAAAGAT GTCCTTGGTG TCGTAGCTAC CTTGGGAAAA 
ATAAATAATG ACAACCTCAG CAGGGTACTC TCAGAGTACT TGGGATTGGA 
CAATATGCTT GGTGTCGTCT GCAAGACTTA TGATGGTGTC GAGGGTCTTG 
AAACATATGA CAAGGAAGGT ATGGTTGATA AAACCAGTGG CATTCATGGA 
CTAGGTCGCA CAATTGGAAA ATTTTTAGAT GGAAGATTCA CTGTCTTTTG 
TCTTGAAAAT ATAAAGCCAT TTTCTGGTGA TTTTATGATC GATGATCCTC 
AGAGGAAACT TCTTTTGCAT AAACCAAGGT TGCCTAGTGG AGAGTTCCCA 
CCTGGTTTTC TTGGTTTTGC AGTAAATATG ATACATTTGG ACCAGGCAAA 
TTTGAGTTGT CTCACAGCTG GGGGCCACGG TCTTAGGGAA ACTTTATTTT 
ACAGCCTGTT TTCTCAGTTG CAAGTCTATA AGACTAGAGC TGAATTGCGA 
AATGCTATTC CTTTGATAAA TGATGGTGCT GTTTCTCTTG ATGGGTCTAT 
ACTAAGACCT AATGGCTCAT TCTGCCTAGG TAATAGGTAT GCAATTATAT 
GGATTTATCC TTTAACATCA CATCATATAC TTTTATTTGA TCATTAGTGT 
TCTGCATATT GTGGGTCCTT CGGTGATATT TAATTGTCCT TTCATTTTAT 
GAGTATATGC GTGATACATT ACCCTGGTTT GCTTACTACA TAAAGTCTGG 
TAACACTAAT TTGCACTGTT CTGTAACAAG CATATTAAGC TTAATTCCAC 
CTCTTCTTTT TGTTAATGAT TATACATGAC CTTACTTTTG AAGGGCAAGC 
TTAGGAATAC AATTTCCTGT AACTGCAAAT CTTGGGGTCT CAAACTTACC 
CGTAACTATC ACTGAACTGG AGGAGCAAGT TAAACATAAG AATTGGGAAA 
AGGAAAGGCT TCTCGAGGAT ATAAAAAGAC AAGAAGATTT GTTGAACCAA 
GTTAAGGATT TGTTCAGCAA GAAAAAGGAA CAGTTCATGG CTTATATCAC 
TCAACCAGGA ATGTTACAGA GAGCATCGCA GGCTTCACCG ACAATTCCTT 
CACCAGCTAC TCCTGGAAGC AATCCATTTG GATCAAGGCC TCCCCACCTG 
CGGTAATAGC ATAAGACTCT AGGCATTTCC TTCAGATTGG AGTTTGCCAG 
TGATAGATGA TGGCTTGATG GCTTCATGCC GTCAGAATGC ATTGTGCAAC 
AATCTTGATG GCATTCGAGG AAAAAAAACA ATCTTGATGT TACTGGCATA 
CCATATGTTG CTAAGTTAGT CTGTCATTTT GCTAGTTGCA AGTTGCAACA 
GATTATACTC TCTTAGTTTT TTTTTAACCC

Gene models with high sequence identity

AT3G49250.1 [+] show detail - defective in meristem silencing 3
E-value: 2e-75; Score: 281.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT3G49250.1

Model type: Protein coding
Short Description: defective in meristem silencing 3
Curator Summary: Similar to hinge-domain region of structural maintenance of chromosomes (SMC)proteins.Putative chromosome architecture protein that can potentialy link nucleic acids in facilitating an RNA1-mediated epigenetic modification involving secondary siRNA and spreading of DNA methylation.
Computational Description: DEFECTIVE IN MERISTEM SILENCING 3 (DMS3); BEST Arabidopsis thaliana protein match is: gamma-irradiation and mitomycin c induced 1 (TAIR:AT5G24280.1); Has 82 Blast hits to 81 proteins in 17 species: Archae - 6; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR