K28140

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	hyponastic (PATO:0002329) (Cauline leaf::Shape::hyponastic)
	rosette leaf (PO:0000014)	upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
T2
	cauline leaf (PO:0000013)	hyponastic (PATO:0002329) (Cauline leaf::Shape::hyponastic)
	rosette leaf (PO:0000014)	upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28140

Determination of introduced cDNA(s)

J013155F22 - Rice Full-length cDNAs - Original: J013155F22

full reading [+] show sequence

GATTTCCTTT CCAGTGGTTT CGCGATGGCG AGCACGCCGG AGCCGGAGAC 
GACGGTGGGA GGCTACGAGC TGCGGGAGCG GCTGGGCGGC CGGCCGCCGT 
CCACGGTGGT GTGGCGCGCC GTGGAGCGGT CGAGCGGATC CCCCGTGGTG 
GTGAAGCAGG TGCGGCTGAC TGGCCTCCCC AGCACCCTCC GCGACAGCCT 
CGACTGCGAG GTCCGCTTCC TCGCCGCCGT CACCCACCCC AACATCATCC 
GCCTCCTCGA CCTCATCCAG ACCGAGAGCA ACCTGTACCT TGTCCTGGAG 
CTGTGCGAGG GAGGAGACCT GGCGGCCTAC ATCCAGCGCA ACGGGAGGGT 
AGAGGAGCGC GTCGCCAGCA ATTTCATGAG ACAGATCGGT AATTCACCTA 
GTAATATTTG CCATATCAAT TTCATTTCTA GCCCTAGTAG CATCTCTTTT 
CTCTTGTTGC CCCCCAATCT ATCACATTAC CCGCAACCTT AGTTAGTTGT 
GTTACAAATT TTTTTTTTTT TGGATCAAAG GGCCTTAGTC CTCCATTTCC 
ATTAAGAGAA ATGTCACAGT TTACAGTAGA GTTGTGTTAC AATTACAACA 
AGAAGATAAT CATGTGTAAG AAATTATGCT TGCCCAACAC CTTGTGGTAG 
GAGCTGGCTT GCAAGTGCTC CGCAGACACC ATATCGTCCA TAGGGACTTA 
AAACCCGAGG TCCACAAATC TCTCTCTTTT CATCTCTTAA TTACTTGTGT 
TATTAAGCTC TAACTGATTT GAGACACCAT TGTTGACTGA TAAAACTGTT 
GTATGCCGCA GAATATCCTG CTCTCTTCTC CTGACAGCAA TGCGATCCTC 
AAGATATCTG ATTTTGGCCT GTCAAGAGTT CTTCGTCCCG GGGAATACAC 
AGATACAAAT TGTGGCACTT GTTTGTACAT GGCCCCAGAA GTTATGCTGT 
TTCAGAAGTA TGATGGTGGG GTAGATTTGT GGAGTATCGC CGCGATTCTC 
TTCGAGCTCT TGAATGGCTA TCCACCATTC CGTGGTAGAA GCAATGTCCA 
GCTGCTTCAA TGCATAAACC GAACCGTGTC TCTTCCATTC TCAGAAGTCG 
TTATTTCCAA GCTACGTCCT GATTCTATTG ATATATGCAC CAGACTTCTG 
TGTAGCAATC CAGTGAAAAG GTTGTCCTTC CAAGAGTTCT TCAGCCACAG 
CTTCCTCAGA CCATAGACGC CTTACTGAAG AGCCTATGCA AGCTTAGCAA 
TATCATCTGA AGTTCAGGAT TAGTTGAATT GTTTGTTTGT TGTACTTGGA 
CATATGCAGG TACCTCTTTG TGTTCAAAAC CTTGTTTTCC TGTAGTCTTC 
TCTGTAGCCT GTAGACTTTT TACACGAAAA ATGTGAATAT AAGTTGGGAG 
TTCTGT

Gene models with high sequence identity

AT1G49180.2 [+] show detail - protein kinase family protein
E-value: 1e-39; Score: 160.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Serine/threonine-protein kinase-like domain	2.1e-19
HMMPfam	Serine/threonine-protein kinase-like domain	1.3e-28
ProfileScan	Protein kinase, catalytic domain	14.111
ProfileScan	Protein kinase, catalytic domain	23.566
HMMSmart	Serine/threonine-protein kinase domain	0.00061
HMMSmart	Serine/threonine-protein kinase domain	0.0000012
superfamily	Protein kinase-like domain	2.5e-21
superfamily	Protein kinase-like domain	3.7e-35
Gene3D	no description	2.9e-17
Gene3D	no description	1.1e-31
HMMPanther	Serine/threonine-protein kinase, putative	1.5e-25
HMMPanther	Calcium/calmodulin-dependent protein kinase-like	1.5e-25
HMMPanther	Serine/threonine-protein kinase, putative	5.9e-57
HMMPanther	Calcium/calmodulin-dependent protein kinase-like	5.9e-57

See the detailed result >

AT1G49180.2

Model type: Protein coding
Short Description: protein kinase family protein
Computational Description: protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, nucleic acid binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase, putative (InterPro:IPR020655), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G37840.1).
Link: InterPro Scan - TAIR

J013126G20 - Rice Full-length cDNAs - Original: J013126G20

full reading [+] show sequence

GGTCCTCTTG CGTTGGAGTT GGGACCAAAG CGAAGGGAAA GTGGAACAGC 
GCTCGCGGGT TGCGCTTGCG CCGGCGAAGA AGCGCGGCGG ACGCCAGATA 
AAGCCCTCCC TCCATTGACA TCAACATGGG TGACAATCTG ATGGATAAGG 
TCAATGCCTT GGGTGAGCGG CTCAAGGTAA GTGGGGCAGA AGTTAGCCGG 
AAGATGTCAG CTGGTGTCAG TAACATGAGT TTCAAGATGA AAGAATTCTT 
CCAAGGCCAG AACATGGCGG ACAAGATAGT CGATGAGGCC ACGCTGGAGA 
CCATGGATGC TCCTGATTGG GCCACCAATC TTGAGATATG TGATATGGTT 
AACACTGGAA ATGTCAACAG CATTGAGCTG ATCCGTGCCA TCAAGAGACG 
CATCATGTTG AAGAATCCAC GAGTGCAATA TCTTGCTCTT GTCCTCCTTG 
AGACCGTTGT GAAAAACTGC GAGAAGGCTT TCTCTGAGAT TGCTGCTGAG 
CGGGTCCTTG ATGAGATGGT AAAACTGATC GATGATCCAC AGACTGTAGT 
CAACAACAGA AACAAGGCAC TTATGCTTAT TGAAGCATGG GGAGAGTCAG 
GAGATGAGCT CCGCTACCTT CCGGTGTATG AAGAGACTTA CAAGAGCTTA 
AGATCAAGGG GAATTCGCTT TCCTGGGCGT GATGATGAGA GAACTCCCCC 
CGCACTAAAG ATGGCACTGT AGGGAAGCGA GCAGGTTCTG GTGCTGATGA 
GTTGCTTCAG GATCTTGACG ACATGATATT TGGCAAGAAG GGCGGCACCT 
CATCTCAGCA GGACAGGAAG GAACAAAAGG ACGATTTCAT CAGTTTCTGA 
CCACCAGATC CAGATACAGC AGGGCCGCAG GGAGACACTT GATATGGATT 
TGTGTGATAT GCCCATCTTG CTTGAATGCA TCCCAGGGAT TTTGTTTGGT 
TTAATGTCTT GGGCATGACT AGTTTCTTGC TGTACAGGAA TAGATAGATG 
TAGCAGTCCC CCTTACTGTG TCAAGCCAGT CAGATTTTGG CTCATGACTA 
CTATCAGTGT CAGAGGTTTC ATTACTTGCT GTACGCTCGG TGAAGGGTTT 
GATGCTGAGT TTTTTTATGG TACATTCTAC TGCTAGTATA TACTACCAGT 
ATATTTGATT TGACGGTGT

Gene models with high sequence identity

AT5G16880.3 [+] show detail - Target of Myb protein 1
E-value: 4e-83; Score: 305.00

InterPro Scan Digest

Program	Description	E-value
superfamily	ENTH/VHS	4.7e-43
HMMSmart	VHS subgroup	4.9e-28
HMMPanther	TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN	1.8e-46
HMMPanther	VHS DOMAIN CONTAINING PROTEIN FAMILY	1.8e-46
Gene3D	ENTH/VHS	3.1e-35
HMMPfam	VHS	3.2e-25
ProfileScan	VHS	36.294

See the detailed result >

AT5G16880.3

Model type: Protein coding
Short Description: Target of Myb protein 1
Computational Description: Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1482 Blast hits to 1482 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 785; Fungi - 378; Plants - 250; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
Link: InterPro Scan - TAIR