K28140

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28140

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
T2  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28140

Determination of introduced cDNA(s)

  • J013155F22 - Rice Full-length cDNAs - Original: J013155F22

    full reading [+] show sequence

    Nucleotide sequence: J013155F22 - full reading
    GATTTCCTTT CCAGTGGTTT CGCGATGGCG AGCACGCCGG AGCCGGAGAC 
    GACGGTGGGA GGCTACGAGC TGCGGGAGCG GCTGGGCGGC CGGCCGCCGT
    CCACGGTGGT GTGGCGCGCC GTGGAGCGGT CGAGCGGATC CCCCGTGGTG
    GTGAAGCAGG TGCGGCTGAC TGGCCTCCCC AGCACCCTCC GCGACAGCCT
    CGACTGCGAG GTCCGCTTCC TCGCCGCCGT CACCCACCCC AACATCATCC
    GCCTCCTCGA CCTCATCCAG ACCGAGAGCA ACCTGTACCT TGTCCTGGAG
    CTGTGCGAGG GAGGAGACCT GGCGGCCTAC ATCCAGCGCA ACGGGAGGGT
    AGAGGAGCGC GTCGCCAGCA ATTTCATGAG ACAGATCGGT AATTCACCTA
    GTAATATTTG CCATATCAAT TTCATTTCTA GCCCTAGTAG CATCTCTTTT
    CTCTTGTTGC CCCCCAATCT ATCACATTAC CCGCAACCTT AGTTAGTTGT
    GTTACAAATT TTTTTTTTTT TGGATCAAAG GGCCTTAGTC CTCCATTTCC
    ATTAAGAGAA ATGTCACAGT TTACAGTAGA GTTGTGTTAC AATTACAACA
    AGAAGATAAT CATGTGTAAG AAATTATGCT TGCCCAACAC CTTGTGGTAG
    GAGCTGGCTT GCAAGTGCTC CGCAGACACC ATATCGTCCA TAGGGACTTA
    AAACCCGAGG TCCACAAATC TCTCTCTTTT CATCTCTTAA TTACTTGTGT
    TATTAAGCTC TAACTGATTT GAGACACCAT TGTTGACTGA TAAAACTGTT
    GTATGCCGCA GAATATCCTG CTCTCTTCTC CTGACAGCAA TGCGATCCTC
    AAGATATCTG ATTTTGGCCT GTCAAGAGTT CTTCGTCCCG GGGAATACAC
    AGATACAAAT TGTGGCACTT GTTTGTACAT GGCCCCAGAA GTTATGCTGT
    TTCAGAAGTA TGATGGTGGG GTAGATTTGT GGAGTATCGC CGCGATTCTC
    TTCGAGCTCT TGAATGGCTA TCCACCATTC CGTGGTAGAA GCAATGTCCA
    GCTGCTTCAA TGCATAAACC GAACCGTGTC TCTTCCATTC TCAGAAGTCG
    TTATTTCCAA GCTACGTCCT GATTCTATTG ATATATGCAC CAGACTTCTG
    TGTAGCAATC CAGTGAAAAG GTTGTCCTTC CAAGAGTTCT TCAGCCACAG
    CTTCCTCAGA CCATAGACGC CTTACTGAAG AGCCTATGCA AGCTTAGCAA
    TATCATCTGA AGTTCAGGAT TAGTTGAATT GTTTGTTTGT TGTACTTGGA
    CATATGCAGG TACCTCTTTG TGTTCAAAAC CTTGTTTTCC TGTAGTCTTC
    TCTGTAGCCT GTAGACTTTT TACACGAAAA ATGTGAATAT AAGTTGGGAG
    TTCTGT

    Gene models with high sequence identity

    1. AT1G49180.2 [+] show detail - protein kinase family protein
      E-value: 1e-39; Score: 160.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 2.1e-19
    HMMPfam Serine/threonine-protein kinase-like domain 1.3e-28
    ProfileScan Protein kinase, catalytic domain 14.111
    ProfileScan Protein kinase, catalytic domain 23.566
    HMMSmart Serine/threonine-protein kinase domain 0.00061
    HMMSmart Serine/threonine-protein kinase domain 1.2e-06
    superfamily Protein kinase-like domain 2.5e-21
    superfamily Protein kinase-like domain 3.7e-35
    Gene3D no description 2.9e-17
    Gene3D no description 1.1e-31
    HMMPanther Serine/threonine-protein kinase, putative 1.5e-25
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 1.5e-25
    HMMPanther Serine/threonine-protein kinase, putative 5.9e-57
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 5.9e-57

    See the detailed result >

    AT1G49180.2

    Model type
    Protein coding
    Short Description
    protein kinase family protein
    Computational Description
    protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, nucleic acid binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase, putative (InterPro:IPR020655), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G37840.1).
    Link
    InterPro Scan - TAIR
  • J013126G20 - Rice Full-length cDNAs - Original: J013126G20

    full reading [+] show sequence

    Nucleotide sequence: J013126G20 - full reading
    GGTCCTCTTG CGTTGGAGTT GGGACCAAAG CGAAGGGAAA GTGGAACAGC 
    GCTCGCGGGT TGCGCTTGCG CCGGCGAAGA AGCGCGGCGG ACGCCAGATA
    AAGCCCTCCC TCCATTGACA TCAACATGGG TGACAATCTG ATGGATAAGG
    TCAATGCCTT GGGTGAGCGG CTCAAGGTAA GTGGGGCAGA AGTTAGCCGG
    AAGATGTCAG CTGGTGTCAG TAACATGAGT TTCAAGATGA AAGAATTCTT
    CCAAGGCCAG AACATGGCGG ACAAGATAGT CGATGAGGCC ACGCTGGAGA
    CCATGGATGC TCCTGATTGG GCCACCAATC TTGAGATATG TGATATGGTT
    AACACTGGAA ATGTCAACAG CATTGAGCTG ATCCGTGCCA TCAAGAGACG
    CATCATGTTG AAGAATCCAC GAGTGCAATA TCTTGCTCTT GTCCTCCTTG
    AGACCGTTGT GAAAAACTGC GAGAAGGCTT TCTCTGAGAT TGCTGCTGAG
    CGGGTCCTTG ATGAGATGGT AAAACTGATC GATGATCCAC AGACTGTAGT
    CAACAACAGA AACAAGGCAC TTATGCTTAT TGAAGCATGG GGAGAGTCAG
    GAGATGAGCT CCGCTACCTT CCGGTGTATG AAGAGACTTA CAAGAGCTTA
    AGATCAAGGG GAATTCGCTT TCCTGGGCGT GATGATGAGA GAACTCCCCC
    CGCACTAAAG ATGGCACTGT AGGGAAGCGA GCAGGTTCTG GTGCTGATGA
    GTTGCTTCAG GATCTTGACG ACATGATATT TGGCAAGAAG GGCGGCACCT
    CATCTCAGCA GGACAGGAAG GAACAAAAGG ACGATTTCAT CAGTTTCTGA
    CCACCAGATC CAGATACAGC AGGGCCGCAG GGAGACACTT GATATGGATT
    TGTGTGATAT GCCCATCTTG CTTGAATGCA TCCCAGGGAT TTTGTTTGGT
    TTAATGTCTT GGGCATGACT AGTTTCTTGC TGTACAGGAA TAGATAGATG
    TAGCAGTCCC CCTTACTGTG TCAAGCCAGT CAGATTTTGG CTCATGACTA
    CTATCAGTGT CAGAGGTTTC ATTACTTGCT GTACGCTCGG TGAAGGGTTT
    GATGCTGAGT TTTTTTATGG TACATTCTAC TGCTAGTATA TACTACCAGT
    ATATTTGATT TGACGGTGT

    Gene models with high sequence identity

    1. AT5G16880.3 [+] show detail - Target of Myb protein 1
      E-value: 4e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ENTH/VHS 4.7e-43
    HMMSmart VHS subgroup 4.9e-28
    HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 1.8e-46
    HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 1.8e-46
    Gene3D ENTH/VHS 3.1e-35
    HMMPfam VHS 3.2e-25
    ProfileScan VHS 36.294

    See the detailed result >

    AT5G16880.3

    Model type
    Protein coding
    Short Description
    Target of Myb protein 1
    Computational Description
    Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1482 Blast hits to 1482 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 785; Fungi - 378; Plants - 250; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR