K28141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28141

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28141

Determination of introduced cDNA(s)

  • J013098O13 - Rice Full-length cDNAs - Original: J013098O13

    full reading [+] show sequence

    Nucleotide sequence: J013098O13 - full reading
    GCCACTTCCC CTTCGAATCT AGGGTTACGA CTCCGACCAA CCTCGCCGTC 
    GCCAAGCTCG CCGACTCACC GGCCTTCCTC GTCGGCCGCG GCGCAGAGGG
    AGAAGGTGGG GAGCGAAGAT GCCGCAGCGG CACTCGAAGA ACAACAACGA
    CCTCGCCTTC TTCACGTACG AGGAGAAGCG GAAGCTCGGG TACGGCACGC
    AGCGGGAGCG CCTCGGCAAG GACTCCATCA AGCCCTTCGA CGCCTGCTGC
    CTCTGCCTCA AGCCGCTCAT CCACCCGCTC TGCTGCCCCA AGGGCCACAC
    CTTCTGCAAG GAGTGCATCC TCGAGTGCCT CCTCGCCAGA AGAAGGACAT
    CAAGCGCAAA CTTGCTGCTC ATGAGGCCCA GAAAAAGCTG GAGAAGGAAG
    AGGAGGATGA GAAGCGTATG CTGCAAAAGT CCAAGGAGTT GGACGCTTTT
    GATCAGCAGA ATCATGGAGC CGTCCCCCAA TACCACGATC GCAGCGGCTC
    TGAAGACAAG AATGGTTTTC ATGGAGCAAA CAGCGTGAAG GTTACTTCCT
    TTGAGGAGGA AGCCCTTCGC AACATGAAGG CATTCTGGCT TCCATCAGCT
    ACACCTGAAG CTACTGCCAA AGTAGAAGCT CCCTCCACTG ACACAATCTG
    CCCCGAGGGA CAGGAGAAGC TCAAGTTGAA ATCGCTCTTC CCTATCTCCT
    TCACTGAAGA AAACACCGAC CAGAAAAACA AGAAGTCGGT GTAGAAGAGC
    TACATGTGCC CCAGTTGCAA GTCTACCCTA ACAAACACCA TGTCCCTGGT
    GACGATCAGC ACGTGTGGCC ATGTCTTCTG CAAGAAGTGC TCTGACAAGT
    TCCTTGTAAC TGATAAGGTC TGCTTGGTGT GCAACAAACC GTGCAAGGAG
    AGGAATTTCG TTCCTTTGGA AAAAGGAGGA ACTGGATTCG CTGCCCATGA
    TGAGCGTCTA GAGGCGAGAG ATTTCAAGCA TTTGGGGAGT GGTTCTGGAC
    TGGGTTTAGT GAAACCTGCC CCAAAGAACT ACTAGCCTCA AAATATCTTA
    GCTGCTGTTG TATATTATTT ATGTTAACCT GAAAATTTTG TTTCAAGCAT
    CCCCTTTCGC TGTGAACAGT CTGGAGCAAA TTCAGTCTTG TTATGCTAGT
    GGCACTATGG TTGCTAATTG CAGCTTTGCC T

    Gene models with high sequence identity

    1. AT1G61620.1 [+] show detail - phosphoinositide binding
      E-value: 8e-122; Score: 144.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 2.3e-10
    superfamily RING/U-box 5.9e-08
    HMMPanther SUBFAMILY NOT NAMED 2.8e-68
    HMMPanther ENOS INTERACTING PROTEIN 2.8e-68
    HMMPanther SUBFAMILY NOT NAMED 4.1e-52
    HMMPanther ENOS INTERACTING PROTEIN 4.1e-52
    HMMPanther SUBFAMILY NOT NAMED 7.6e-50
    HMMPanther ENOS INTERACTING PROTEIN 7.6e-50
    Gene3D no description 2.7e-05
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Zinc finger, RING-type 10.365
    HMMPfam Rtf2 1.4e-08

    See the detailed result >

    AT1G61620.1

    Model type
    Protein coding
    Short Description
    phosphoinositide binding
    Computational Description
    phosphoinositide binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Nitric oxide synthase-interacting (InterPro:IPR016818), Zinc finger, RING-type (InterPro:IPR001841); Has 510 Blast hits to 510 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 129; Plants - 138; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR