K28150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28150

Determination of introduced cDNA(s)

  • J023105E02 - Rice Full-length cDNAs - Original: J023105E02

    full reading [+] show sequence

    Nucleotide sequence: J023105E02 - full reading 
    GAGCACAGGG GGGACGCCGT GAGCAGCCTG GTGTACGAGG CGAACGCGCG 
    GGTGAGGGAC CCGATCTACG GCTGCGTCGG CGCCATCTCG TCGCTGCAGC 
    AGCAGGTGGA GGCGCTGCAG GCGCAGCTGG CGCTGGCGCA GGCGGAGATG 
    GTCAGGCTGA GGATGAGCAA CGACTACATC GGCCGCCGCC TCCGGGCGCG 
    CGGCTGCGGC GGCGGCGGCG GAGGCGGAGG CGGGAGCACC ACCACCACCA 
    CCGGCTCGCC GTCGTCCATG TCGTCGCCGG CCAAGACGGC GGAGCCGGAG 
    CCGCTCTGCA AGCCCACGCC GGAGCTGGAC ATGGTGGTGG ACCAGCCGGA 
    CTTCGGCTTC TGGTCCTACT AGGGCTTTGA TCAAGGTAGT ACTACTAGCT 
    GATTGTAGCT GTGATGATGA TCAGGTGATG TTTTTGGAGT TAAGTGACAG 
    ATGGTATGGT ATGGTATGGT ATAGTAGTAG TTCATAGTAG AGTCAAGCGA 
    GTAAAGTATA TGGCAATGTG TGCGCAGTAG CAGCGTGACA CTGGGAGGGA 
    GGTGAACATA GGCAGAGAGG CCTCCTCCTA AACCTTCTTC TACTGGGATA 
    TATCAGGGGC TTTTTTTTTG GCTGTCCTTC TATGAGAAGG TAGAACACTG 
    TTAC

    Gene models with high sequence identity

    1. AT1G31320.1 [+] show detail - LOB domain-containing protein 4
      E-value: 0.000000002; Score: 59.70

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Lateral organ boundaries, LOB 10.807
    HMMPfam Lateral organ boundaries, LOB 0.0000000000000025
    Coil coiled-coil 0

    See the detailed result >

    AT1G31320.1

    Model type
    Protein coding
    Short Description
    LOB domain-containing protein 4
    Computational Description
    LOB domain-containing protein 4 (LBD4); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 9 (TAIR:AT1G16530.1); Has 1039 Blast hits to 1034 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1039; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR