K28150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28150

Determination of introduced cDNA(s)

J023105E02 - Rice Full-length cDNAs - Original: J023105E02

full reading [+] show sequence

GAGCACAGGG GGGACGCCGT GAGCAGCCTG GTGTACGAGG CGAACGCGCG 
GGTGAGGGAC CCGATCTACG GCTGCGTCGG CGCCATCTCG TCGCTGCAGC 
AGCAGGTGGA GGCGCTGCAG GCGCAGCTGG CGCTGGCGCA GGCGGAGATG 
GTCAGGCTGA GGATGAGCAA CGACTACATC GGCCGCCGCC TCCGGGCGCG 
CGGCTGCGGC GGCGGCGGCG GAGGCGGAGG CGGGAGCACC ACCACCACCA 
CCGGCTCGCC GTCGTCCATG TCGTCGCCGG CCAAGACGGC GGAGCCGGAG 
CCGCTCTGCA AGCCCACGCC GGAGCTGGAC ATGGTGGTGG ACCAGCCGGA 
CTTCGGCTTC TGGTCCTACT AGGGCTTTGA TCAAGGTAGT ACTACTAGCT 
GATTGTAGCT GTGATGATGA TCAGGTGATG TTTTTGGAGT TAAGTGACAG 
ATGGTATGGT ATGGTATGGT ATAGTAGTAG TTCATAGTAG AGTCAAGCGA 
GTAAAGTATA TGGCAATGTG TGCGCAGTAG CAGCGTGACA CTGGGAGGGA 
GGTGAACATA GGCAGAGAGG CCTCCTCCTA AACCTTCTTC TACTGGGATA 
TATCAGGGGC TTTTTTTTTG GCTGTCCTTC TATGAGAAGG TAGAACACTG 
TTAC

Gene models with high sequence identity

AT1G31320.1 [+] show detail - LOB domain-containing protein 4
E-value: 2e-09; Score: 59.70

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Lateral organ boundaries, LOB	10.807
HMMPfam	Lateral organ boundaries, LOB	2.5e-15
Coil	coiled-coil	0

See the detailed result >

AT1G31320.1

Model type: Protein coding
Short Description: LOB domain-containing protein 4
Computational Description: LOB domain-containing protein 4 (LBD4); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 9 (TAIR:AT1G16530.1); Has 1039 Blast hits to 1034 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1039; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR