K28229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28229

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28229

Determination of introduced cDNA(s)

  • J013126A02 - Rice Full-length cDNAs - Original: J013126A02

    full reading [+] show sequence

    Nucleotide sequence: J013126A02 - full reading
    GTGGTTGATC TCTGAAGAGT TCAGAATTCA GAGCAGAAGT AGTATGAAGC 
    TTCTTGACAC ATGCATGCCA AAACATGGCT CCGTTTGGAG AAGGCTTAGC
    AATTAGCATG TTTGAGGATG TGCAAGAGGA GGTTTATCCA GGACAATCTA
    TAAAGTGCAC ACCATGGAAC CTGACAACTT GAAGCTCACC GAATTTCTTG
    GTTTCACTCA TCATGCATAA GCCAGCAAAG TAGCCAACAC AATCGAAAAT
    ACCAAAACCG AGAGTGTCAA TGGTTGTTTT GTCAGAGGAC TTGCATTAGG
    CAACCATGGA TATGCATCCG GAGGTGGCAT GACACAATTA TCACCATTGA
    AGTACACGCG GTGTGGGAAG GCCCATCCCT TGTCAAAGGT GAAGTCCTTG
    GAATCCTTAC GCAGAAGAAG TTCTGACTGT GCATTTCCAA GTGGACCAGC
    TTGCATGAGC AAATCGTTAT AGAACTTAAC TCCCCAGAAC ATCGCAGTAT
    CATCTAAAAT AGAAGGAATA AACTTCATCA GAGAAAGAGA GAGAGAGAGA
    GAGATAAAGG AACGTATTAC AAGTGCACTC CAATTTTCTT AAATGAAGGA
    GAACAGTTTG TAAATTGACT TACTTATCTT GCTTCCATAT GGAGTAAGTG
    GCTTGTAGTT GAAGCTAAAC AGCTGGGTGA TATTATTGAA GTTAGGATGT
    TGAGCGACCA AATTCCACTG TGTGTAATTC AAGCGGTAGT TGAAGTTCGT
    AATCGTGATC TTCACTCTCC AATATTCCTT ATAGTTGAGT TTCACATGCC
    AGTGGATTCT GATCGGGCAC ATGTGAGAAG TACATTGGAC AAGAGGCTGA
    CCGGTCCATT TGCCAGGGCC ATCAATGGCA GATTGTAAAT AAGGTGAATT
    CTCACTGTGG AAATGCATGG AACTTGTTAG CAATTTTGCA GAAAAGTTGG
    GCCTCAACAA GAAGCGAAGT AAGAGTTTTG GTTTTATTAA CTCACTTTAC
    ACAGCTTCCA GGACTTGTCC CATTGTTTTG GCAGCCACAA GAGCATGTTG
    GGCAGTTCAC AATTGTGTCA TTATAAAATG ATGAGAGAGA TACACAGCAG
    GAAGGAGTCT TCTGAGCAAG AAATTGGGAG TATGTGCAGG TCACATTCCA
    TGTCACTGCA AACAGATTTT ATTTTTGTTA AGAAACAAAA AACAAAAATG
    AACTTTATGG TATAAGATTT TGACAAATTT AACTTCTATA TGGAGCCACT
    ATGATGCATG TCTGCATTTG ACGAATATTA TTTGCTAGAG AATAATATTA
    ACTGAATTAG CTGTATTCTA TTAGGCCAAC ATGCCAAGTA ATATAACCTA
    TTATCAACTA TTATTCACAG TTGGACTCAT CTCACTTTGA GAACAATCTC
    TTTCCCTTCA ACAGATTACA TCTTCTTACT AACCCTACAC ATAAGGTAAC
    CTAGTTCAAC CATGCAATTG TTGTTTAGGC TGCAAATGCA TTTCCTCAAA
    GAATGAAAGC AATTGGTATT AAACATTAAA GAACAACAGA TGAGCTACTT
    ACTTAGAGCT TGGGTTGCTC TGCGCCCATC CCCGGTGAAA AACTTAGTAG
    GCCTGACAAT CATAGCACGC CCGCACGTGT ACCCAGGACC TGGGGCCTTA
    AGAGTGAAGT TCTTAGGCAA CTTAACTGTC TTGTTGGTAG TCCCAGCAAG
    ACCTACACTG ATCTGGAAGG AAGAAGCAGC ATTTGATGGG TCCTGGTTAA
    ATGTATTTAT AACTCCAGCT TTGCAGCAAT TAGCGATTTG CATGTTGTAT
    GGGGTGCCCG GAAGCAGATC AACAACTGTG GGGTCCTTCT TGCAGCAGTG
    GGGCGTGCCA CCCTTGAACT TTGAGCAATC GCCCTGCTCA GTGGTCTGTG
    CTCCAACCAT CGACCAAATG ACCTCCTTCT TTGCCCATGT CCACCCCAGC
    TGCCACCCAG GTGCCTGGAT GTGCCGGAAT TGTTGATAGT TGAACATCGT
    GACCACAGCC TGCACAAGAA ACATTTTGGG GGGAAATCAT GACACACATA
    TACAAGATAA TCAGAGTATC CATAATATGC TGACATAAAA CTCGTGTTTA
    TTATTGTTAA TTGCTGCATA TGTTTCTGAC CAGCTGCTGG TTATGCTATC
    AACTTTGTAC TTCAAAGACA ACTTGTAGTA GTATCAAATA AAATAAAATT
    ATGGCCTAAT AATAGTTGGG T

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 1e-93; Score: 103.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl-phosphatidyl inositol-anchored, plant 1.9e-66
    BlastProDom Glycosyl-phosphatidyl inositol-anchored, plant 5e-87

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR