K28244

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28244

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28244

Determination of introduced cDNA(s)

  • J013120P05 - Rice Full-length cDNAs - Original: J013120P05

    full reading [+] show sequence

    Nucleotide sequence: J013120P05 - full reading 
    GATCGCCACC GTCGTTCACA CCACACCACC TGCTGCACAC AGCTCGATCG 
    AGTTAGCCCA CTAGCTACCA ACCAAGCTGC CGGCGAGAGG TATGGCGGCG 
    TGGCGCGGTC TGGCGTTGGC AGCGGTGGTG GCGTGGTGCG TGGCGGCGGC 
    GGCGGCGGCG CCAGACGCGG CGCTGCAGAG CAAATGCCAG CAGGACTTCA 
    CGAAGCTGAC GGACTGCATG GACTACGCGA CGGGGCACGA GGAGGCGCCG 
    TCGTCGACGT GCTGCGGCGA CATGTCGGCG ACGCAGCAGG CGCGGCCCGA 
    GTGCCTGTGC TACATCATCC AGCAGGTGCA CGGCGGCCGG AACGAGGTCC 
    AGTCGCTCGG CCTCCGCTTC GACCGCCTCC TCGCCATGCC CACCGCCTGC 
    AAGCTCCCCA ACGCCAACGT CTCCCTCTGC ATCAACCTGC TGCACCTGAC 
    CCCAAGCTCA CCGGACTACG CTGTCTTCGC CAACGCCTCC AAGGCAGCGG 
    CTACGACGCC GTCAAGCACC ACCCCGGGGG CGGCGGCGGC CACCGCCGGC 
    GGCTTCAAGG TTCAGGCGGG GCTCAGCTAC GGCGTCGTCG CGGCGGCGAT 
    GGTTTCTGCC GTCTTCTCAT CCATCTTCTG ATCCGTGAAA CAAGCTAGTC 
    ACCCACCCAT TTTTCTTTGG GAAAAAATCT TTTCTGTCTC TTGATCTCTA 
    CGTCGTTCAG CTTTTACTCT GCAAGAAACG AATGCACACT GGATGGATGG 
    ATGGATGGTT GGTTTGTGAT GTGCTACACG AAGATTCGTT CTGATGTTGT 
    ACTCTTTTGT ACCCTGATAA ATAGATTTGA GACTTGATTT T

    Gene models with high sequence identity

    1. AT1G27950.1 [+] show detail - glycosylphosphatidylinositol-anchored lipid protein transfer 1
      E-value: 5e-23; Score: 105.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 6.7e-05
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 1.6e-16
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 9.9e-06

    See the detailed result >

    AT1G27950.1

    Model type
    Protein coding
    Short Description
    glycosylphosphatidylinositol-anchored lipid protein transfer 1
    Curator Summary
    Encodes LTPG1, a lipid transfer protein with a predicted GPI (glycosylphosphatidylinositol)-anchor domain. Localized in the plasma membrane. Disruption of the LTPG1 gene causes alterations of cuticular lipid composition, but no significant changes on total wax and cutin monomer loads are seen.
    Computational Description
    glycosylphosphatidylinositol-anchored lipid protein transfer 1 (LTPG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G44290.1); Has 597 Blast hits to 593 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 597; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR