K28304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28304

Determination of introduced cDNA(s)

  • J023148G19 - Rice Full-length cDNAs - Original: J023148G19

    full reading [+] show sequence

    Nucleotide sequence: J023148G19 - full reading
    GAGGCGTCGG GGTTTCTGCA GGACAAATAC AAGCAAGCAC GGCTGGCCCT 
    GGGCGACGTG ACGCCGGCGG AGCTGCTGGT GCAGGAGGCG ACCAACAACG
    ACGGCGGAGT GGGCCCCGAC GCCAGGACCC TGGCCAGCAT AGCCGACGCC
    GCCTTCGACA TGGACGACTA CTGGAGGATC GCGGGCGTGC TGAGGCGGAG
    GATGGCCCGC GCCGGCGACT GGAAGGAGTG GAGGCCCGTG TACAAGGCTC
    TGGTGGTGCT GGAGTTCCTG CTCACCCACG GGCCCGACGA GGTCCCACGA
    GACTTCCTGC CGGACGTTGC CGCCCTGCGC GACCTACGCG GCTTCACCCA
    CGTCGACGAC AGGGGCTTCG ACTGGGGTGC CTGCATGCAG AGGCGCTGTG
    ACAGCGTCCT CTCGCTGCTC ACCGACGCCG AACGCCTCCG CGACGCACGA
    CGCCGCATCC GCGTCTCCCA CTCTACTCAC GAGCTGGTGC AGCAGCATGG
    TTCCCCTTCC TCCTCCTCGG GGTCCCCCTC CTCTGCTTCC TCCCGGACCT
    CCTCGCAGTC GCACGCCAGC AGCTGGTCCG TCGCCTCCTC CGATAGCCCC
    ACCATGGTCT GCCACTGTGC CGCCGCCGCC GACTACCGCC ACGACAAGAA
    GTTCGACGCC TACACGGCGG ACGACGACTG GATGCAGCAC CTGCAGGTTC
    ACAACACCAC CACTACGCTG GAGTACGACG ACGACCACGA CCACGACCAC
    GACTGCCCGA ATCATCCTCC TCTCACTACA CCCCGCAGCT GGGACGCCCA
    CGACGACCAC GACTGCCCGA ATCATCCTCC TCACACTACA CCCCGCAGCT
    GGGACGCCCA CGTCCACGAC TTGTCCCTGC TGCAGCGGCG CGGCCGCCCA
    GGAACAGATG CCACCTTCTG CTCCAGGATG CTTGGCGCCG TCAACGTCAG
    CAGCCGGGCA TCCGGCTTCC AGAGCTTGTC GCAGCCGGAA CGGAGGTCCG
    CCAGCAAGAA GCTCCAGCGT CAGCTTTCCA TGGAATATTG ATCCCCCCCC
    CTCCATTAAT TCTATCATTC CAACAACAAT ATAATTCCGA TCCGAGTTTA
    GTCCAGCCAG CTAGCTGAAT TGCAGAGCTT AGCCTAAGCC AGCTAGCTAG
    TAGCTTCTTT GATTTCTTTG GTCCCTTGCT ACACTCGACT CAAATCAAAT
    GTTATTGTTA CTTGTTTCTT CC

    Gene models with high sequence identity

    1. AT3G23350.1 [+] show detail - ENTH/VHS family protein
      E-value: 2e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ENTH/VHS 8.3e-34
    HMMSmart Epsin-like, N-terminal 3.7e-24
    Gene3D ENTH/VHS 3.9e-34
    ProfileScan Epsin-like, N-terminal 28.08
    HMMPanther ENT1-RELATED 1.2e-51
    HMMPanther EPSIN/ENT-RELATED 1.2e-51
    HMMPfam Epsin, N-terminal 5e-27

    See the detailed result >

    AT3G23350.1

    Model type
    Protein coding
    Short Description
    ENTH/VHS family protein
    Computational Description
    ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G46540.1); Has 1024 Blast hits to 1024 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 200; Plants - 173; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR