K28307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28307

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28307

Determination of introduced cDNA(s)

  • J033127N14 - Rice Full-length cDNAs - Original: J033127N14

    full reading [+] show sequence

    Nucleotide sequence: J033127N14 - full reading 
    GTGGCAGGCA GCGGGTGATA GGAACCGCGA CGCCATTGGC GCTTCTTCTG 
    TCTTGGTGGT TGCCGTGCCT GCGCGCATCG ATGGAGGGGT TCTGCTTCGC 
    GCGGTGCCGC TTCACGCGGC TGGTGGTGGC GATGCAGCTG GTGATGGGCG 
    TGCTCGTCAT CTGCATCAGC ATGGCCAGCC TCCACCGCTT CTACACCACC 
    GACGCCCTCC TCCCCGGCGG GCTGGACGAC CCCGCCCGCT GCGCCAGGTT 
    CCACGGCGCC GTCGCCGGCG GGTACTCCGG CTTCGACATC CGCGCGCTGG 
    CGGACCGCGT CGACGAGGTG CTCGTCCAGC TCGCCGAGCT GCAGGACAAG 
    CTGGAGGCCA CGGCGCTCAA GATCGGCAAG AAGACCAAGA AGAGGAAGGG 
    GAAGGGGAAG CTGCAGCAGC AGGAGAACAT GACCATGACG GAGTTCCAGC 
    GATTCCTGGA GGACGAGGTG ATCCACCCGC TGTACGGCGC GCACATCGTG 
    CTCCGGCTGA TCCGCATCCC CCGCCCCGAC CCCGACGGCG GCGCCCCGGC 
    CGTCGACCCG CTGGTCAACT TCTTCGCCGC GGAGGAGACG CGCAAGTACG 
    TGACGGCGAA GCGCAACCGC GAGGGGCGGC CGGGCGCGTA CGGCGCGAAC 
    CGGACGTACG GCAGCATCGG GCACGCGTGC GTGGTGATGC GGCGGGAGCT 
    GGACGAGTAC ATGAGCTACG ACGTGGGCGC GCTCTGCCCC GACGACTGGG 
    ACCTCGGCCA GCGCCTGATG CTCGGCGGCT GCGACCCCCT CCCCCGGCGT 
    CGCTGCCTCG CCCGCGCCTC CAAGCTGTTC CGCCGGCCGC TCCCCATCAA 
    CGAGTCGCTG TGGGCGCTCC CCGACGACGG CAACGTCCGG TGGAGCCGCT 
    ACCACTGCCG CGGCTACCGG TGCCTGTCGG CCCGCAACCC GCGGCGCGGC 
    TACGACCGGT GCGTGGGCTG CTTCGACATG GACAGGGAGA AGCAGCGGTG 
    GATGCAGGGC AGCAACGGCA CCACCCTGGC CGACTTCCGG ATGGAGGAGG 
    TGCTGGCGGT GAAGCCCGGG GAGATACGGG TGGGGCTGGA CGTGACGGTG 
    GGGACGGGGA GCTTCGCGGC GAGGATGAGG GAGCGAGGGG TGACGGTGGT 
    GACGACGGCG GTGAACCTGG GGGCGCCGTT CGCGGAGACG GTGGCGCTGC 
    GTGGGCTGGT GGCGCTGTAC GCCGGGCTGG GGCAGAGGCT GCCGCTGTTC 
    GACAACAGCA TGGACATGGT GCACACGGGC GGGGTGCTGG ATGGTTGGGT 
    GGACCTGCAG ATGCTGGACT TCGTGCTCTT CGACTGGGAC CGGGTGCTCC 
    GCCCCGGTGG CCTCCTCTGG GTGGACAAGT TCGCCTGCGC GCGCAAGGAC 
    CTCGACGACT ACATGTACAT GTTCCTCCAG TTCCGCTACA AGAAGCACCG 
    CTGGGTCGTC TCCTTCAAGT CCAGGGACGA GGTCTACCTC TCCGCCCTGC 
    TCGAGAAGCC GCTACGCTCA TGATCCACCA GCTCGTATCT CTCTTAGTTA 
    CGCTGCAATG CTGCGTCTGA TATGTGTTGC TGTTAATCTT AGTAGCTCTG 
    ATTCATCTGA CACCTCGATG AATAAATACA ATTATCTATC TATTATATTA 
    TTAAAGAAAT AGAAAAAGGA GTATTC

    Gene models with high sequence identity

    1. AT3G05390.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mi...
      E-value: 9e-154; Score: 540.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.7e-05
    FPrintScan PRICHEXTENSN 1.9e-09
    FPrintScan PRICHEXTENSN 1.9e-09
    FPrintScan PRICHEXTENSN 1.9e-09
    FPrintScan PRICHEXTENSN 1.9e-09
    superfamily S-adenosyl-L-methionine-dependent methyltrans 4.2e-12
    HMMPanther METHYLTRANSFERASE 0.00066
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 6.5e-08
    Coil coiled-coil 0

    See the detailed result >

    AT3G05390.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR