K28313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28313

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28313

Determination of introduced cDNA(s)

  • J023110K07 - Rice Full-length cDNAs - Original: J023110K07

    full reading [+] show sequence

    Nucleotide sequence: J023110K07 - full reading
    GCCTCGCTTC TCCCGCCATC TTCTCCTCCT CCACGGCCAT GGCCGCCGTC 
    GCGTTCCGCT CGCTGCTACA CCCCGCCGCC GCGGCCCTCA CCGAGCGTGT
    GCCACTGCCT CCCGCTCACC TACGGCTCCA GGGCCTTCAC CGCCACCGCG
    TCGGCGTCCT CAACCTCTTC GTCGCCTCCG GTCATCGCCG CCGCATTCTG
    CTTCCCCTCG CCGCCGCCGG TGGAGAGTTC TCTTCGGAAG AGGAGGAGTA
    CGCCAACGAG GAGGAAGAAG AGGGGGAGGA GTACGTGGAG GAGGAAGAGG
    AAGATGGGGA GGAGGAGGAG GCGGCGACGG TGGCGGCGCC TCGCGGATAC
    TACCCGCCGA GAAGCCGGCC GGCGCTCGGG CAAGAGCCCG GCCGCCTCTT
    CGTCGGCAAC CTCCCCTACA CCATGACCTC CGGCGAGATC TCCCAGACCT
    TCTCCGAGGC CGGCAGGGTC GACAACGTCC AGATAATCTA TGACAAGGTC
    ACCGACCGGA GCCGCGGCTT CGCCTTCGTC ACCATGGCCA CCGCCGAGGA
    GGCTGCCACC GCCATCCAGA TGTTCAATGG GGCCCTGCTT GGAGGGAGGA
    CTGCAAGGGT GAACTACCCG GAGGTGCCGC GGGGAGGGGA GAGGGCGGTG
    GGATCGGCGG CGGCCACAAG GGAGAACAGG CGCGATGACG GCACATTCAA
    GATCTATGCC GGGAACCTGG GGTGGGGTGT GCGTGCCGAT GCTCTGAGGG
    CGGCGTTCGA GGGGCAGCCC GGCTTGCTTG ATGCTAGGGT CATCTTCGAG
    CGCGACTCCG GTCGGTCCAG GGGTTTCGGA TTCGTCTCCT TCAGGACTGC
    AGAGGATGCA CAGGCTGCAT TGGAGGCATT GGATGGAGTG GAACTGGAAG
    GAAGGCCACT GAGGCTCAGT ATGGCGGAAC AGAACCCAAC AGCTGGTTCT
    CCTAGCACAG TGCAGTCACA GGAGGAAGAA ACTGCTTCAG AATCATCTGA
    TGCAGAGACA GAGCAGAGCA TTACCTCAGA ACCTTCTGAA GCTGAAACGG
    AAGAGAGCAA CTTGCAGACA GCTGCCAGTT ATTAGTATCT AATTGATGGT
    TGCACTGATT TACTTATTCT GCCATTCGGC ATTCCAATCT AAATTGTACT
    TGTCCAATTG AAAATTTTGA CACAAGAGAT GCTAAAATGG GATATGAGCC
    ATAGCCAATA GAATATTATT AGACATAGAG GTGCTCCGAG TTTCAGTTAT
    TGCTGTAATA TATTGTGCAG AAATCTAAAG TGCAACTGTT TTGCTTCCT

    Gene models with high sequence identity

    1. AT3G52380.1 [+] show detail - chloroplast RNA-binding protein 33
      E-value: 3e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 18.547
    ProfileScan RNA recognition motif, RNP-1 17.489
    HMMSmart RNA recognition motif, RNP-1 3.1e-26
    HMMSmart RNA recognition motif, RNP-1 3.3e-23
    superfamily RNA-binding domain, RBD 8e-26
    superfamily RNA-binding domain, RBD 1e-21
    Gene3D Nucleotide-binding, alpha-beta plait 6.3e-27
    Gene3D Nucleotide-binding, alpha-beta plait 2.1e-22
    HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 2.2e-58
    HMMPanther RNA-BINDING PROTEIN 2.2e-58
    HMMPfam RNA recognition motif, RNP-1 4.4e-20
    HMMPfam RNA recognition motif, RNP-1 3.6e-16
    Coil coiled-coil 0

    See the detailed result >

    AT3G52380.1

    Model type
    Protein coding
    Short Description
    chloroplast RNA-binding protein 33
    Curator Summary
    chloroplast RNA-binding protein
    Computational Description
    chloroplast RNA-binding protein 33 (CP33); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 514069 Blast hits to 499112 proteins in 22048 species: Archae - 10752; Bacteria - 302541; Metazoa - 101965; Fungi - 16255; Plants - 33338; Viruses - 35348; Other Eukaryotes - 13870 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR