K28320

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28320

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28320

Determination of introduced cDNA(s)

  • J033089L07 - Rice Full-length cDNAs - Original: J033089L07

    full reading [+] show sequence

    Nucleotide sequence: J033089L07 - full reading 
    GTCGCTCTCC TCCAGCTCCG CCTCCGACGC GCGCACGCCT CTCCCTCCCC 
    TCCTCCTCCG CCTCGCCTCG CAGTGTGGAA GAAAGGAAGG AAGGCTAAAA 
    CCCTAGCGAG CGCGCGAGCG AGCGAGGGCT CTCTGCTTCC TTGCGATGAC 
    GGCGCCGGCG GACAAGGGGA AGAAGGCCAA GACCGACGCC GACGGCGGCG 
    CCGCCGAGGA GAACGAGCAG ATCGACGGCG CCCTCGTCCT CTCCATCGAG 
    AAGCTCCAGG AGATCCAGGA CGAGCTCGAG AAGGTCAATG AGGAAGCTAG 
    TGACAAGGTT TTGGAGGTCG AGCAGAAATA CAGTGAGATT CGCAGACCTG 
    TCTATCTCCG AAGGAGTGAC GTTATCCAAA CAATCCCCGA CTTCTGGCTG 
    ACAGCGTTTC TGAGTCATCC TCTACTTAGT GAGCTTTTGA CCGAAGAGGA 
    TCAAAAGATG TTCAAGTACC TGGAGTCTGT CGACGTGGAT GATTCTAAAG 
    ATGTCAAGTC AGGCTACTCC ATAACTCTTA CCTTCTCCGA GAACCCGTAC 
    TTTGAAGACA AAGAGCTCAC GAAGACATAT GCCTTCGCTG ATGACGGAAC 
    AACCACGATA AATGCTACTA GCATTAAGTG GAAAGAAGGA ATGGAAATTG 
    CAAATGGGAA TGCCAAGAAG AAAGGGAGCA AGCGACCATT GGTTGAGGAA 
    AGTTTCTTCA CCTGGTTTAC TGATACAGAG CACAAGAGTC TTGCTGATGG 
    TGTGCAAGAT GAGGTGGCTG AGATCATCAA GGAAGACCTG TGGCCCAATC 
    CATTGAAGTA TTTCAATAAT GAGGCTGAAG AGTTAGGAGA GGATGACGAC 
    GAAGAGGGGT CTGATGCTGA TGAGGGTGAA GAGGATGAGG AGGAGGAGAA 
    CTGAGTCTAG GATGTCAGAT TGCGATGGTG CCGATCGTCT GCATTTTGTG 
    GATGCTGTCA CTCTGAAGGG CGAAGTTGCG TGACCCTCGG TTGCTTCTTT 
    CTTTTTTCTT TTTGATGACT TAGCTGGAAC CCTTAGGAAC TGTTTAATGC 
    CTTATGGAGT CCGTCGTATT TTCGACTCAA AGGAGACACC TCTATATCAT 
    AATCTGCGTA TAACCATGGA AGACATTTTA ACCTGCTGAT GTGTGGTTCA 
    TTGCGCTGCC TCTGGTGCTG TAGGGTGTTC GTTCCTTTGT GCTCTCTGTC 
    TTTTTTTTTT TTTTTTGTGT GTGTGTGGTC GCGCTGGCAT TGTTGCCAGT 
    CTGATGGGCT GTTATTTCTC CCCCTAGAAA GAGTGAAAAA CCTGGCTTGT 
    GATCATTGTT TACG

    Gene models with high sequence identity

    1. AT1G18800.1 [+] show detail - NAP1-related protein 2
      E-value: 7e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SET 1.3e-95
    HMMPanther Nucleosome assembly protein (NAP) 1.3e-95
    Coil coiled-coil 0
    HMMPfam Nucleosome assembly protein (NAP) 1.5e-48

    See the detailed result >

    AT1G18800.1

    Model type
    Protein coding
    Short Description
    NAP1-related protein 2
    Curator Summary
    Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.
    Computational Description
    NAP1-related protein 2 (NRP2); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell proliferation, cell differentiation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1-related protein 1 (TAIR:AT1G74560.2); Has 4380 Blast hits to 3595 proteins in 373 species: Archae - 7; Bacteria - 141; Metazoa - 1827; Fungi - 714; Plants - 336; Viruses - 93; Other Eukaryotes - 1262 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR