K28331

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28331

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28331

Determination of introduced cDNA(s)

  • J013068F02 - Rice Full-length cDNAs - Original: J013068F02

    full reading [+] show sequence

    Nucleotide sequence: J013068F02 - full reading
    GACTAGAGAT AGTGAGAGAA GATAACAAAG TGTGTTCTCG CTGACGAACC 
    AAGAATGCAG TGTCACTCAT CCACAAATGG TGATGCTTGT TTGCTGCGGA
    CAACCGGAAG AAGCAGAATT CGGCCGATAT AGTACCAAAT TGCAATAAGA
    AAATGCATCC ATATTCACTT AAAAGTTCCA AGGGAGCACC GTTTCCACCG
    CGACCGATTC TTGTCTTCCT CATTGCAATA TTTGGATTCT ATGTATGCTA
    CATCTCCTTT AACCAGATAA CACTAGAGAA TAGATCTGAG GAGAACAGTG
    GAGAAGTGCA GGCAGAAATT CATTGCCGAA AGCCTCATCT TCCTCATGAG
    GAGCTGCGTT ATGTGCACTT TCCGAAACCT GAGAGTTATA GCAGGGGAGA
    GTGTTCCTGC AATCTGGTTC GATCCTTTGT GCTTGTATCT ATGCAACGGT
    CGGGAAGTGG ATGGTTTGAG ACTTTGCTGA ACAGCCACCC TAACATCAGC
    TCAAATGGTG AAATATTTAA CAGGGTGGAT AGAAGAGAGA ATATCTCATC
    TATCTTACAG ACCCTTGACA AATTGTATAA TTTGGATTGG TTCACCAGTG
    CAGCAAAGAA TGAGTGCACG GCTGCATTTG GATTGAAGTG GATGCTAAAT
    CAGGGGTTTA TGGACCATCA TGATGATATA GCTAGTTATT TAAACAAGAA
    GGGTGTTTCC GTGATATTTC TCTTCAGGAG AAATACATTG CGCAGGCTTA
    TCTCTGTTTT GGCTAATGAT TACGACAGAG ATGCGAAGCA GCTGAATGGA
    ACCCACAAAT CCCATGTACA CTCAAAAGAA GAGGCTGAGA TATTAGCGAA
    ATTCAAGCCG GTGCTGGATG TGTCAAATCT GATTCCAAAC ATCAGAAATG
    CCGAGAAATA CATCAGAGAT TGCTTGGACC ACTTCAACAC CACACGGCAC
    ATGATCCTCT ACTACGAGGA TATTGTCCGC AACAGAAATG CATTGTTCCA
    GGTACAAGAA TTCCTCGGAG TTCCGGTGAG AAAGCTGGTC AGCAGGCAGG
    TGAAAATTCA CACTAGTCCT CTTCCAGGCC TTGTCAGGAA CTGGGATGAT
    GTGAGCAACA AACTGAATGG GACACAGTAT GCTCATTTTC TTGACGGTGC
    AGATTATGTC AGGTGATCTA CATGGATGTG AGCGACAGGA TTTTTTTTTT
    CATATGGGGT TTTAGTTGCC ATATGATTGA TTCTTTTGGT ACAAATGAGT
    TGGTAAAAGA AAGGGATAAC GATAAATAGA TCAAGATGAG AGACCTTGTG
    ATCAAATTGT ACATGCTTTC CACTACTCAT TACCTTCAGA GCTCAAATTG
    C

    Gene models with high sequence identity

    1. AT2G15730.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 7e-103; Score: 371.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 2e-22
    HMMPfam Sulfotransferase domain 1.5e-07

    See the detailed result >

    AT2G15730.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G34420.1); Has 149 Blast hits to 147 proteins in 26 species: Archae - 0; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR