K28344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28344

Determination of introduced cDNA(s)

J023042H10 - Rice Full-length cDNAs - Original: J023042H10

full reading [+] show sequence

GATGAACATG AGGACCATCA TATCCCTCAT CCCAGATACA TGATCTGTAC 
TGTCTCCTCC TCTCTAGCTT CTCTCCTCTC CCTGCTGTGC CCCTTGCTTT 
GTTGCTTGGT CAATTAGAGC TAAGCAGCAA GCTAGCTTCC TGGAAGCAAG 
GCCGGCGCCT GGCTGGGACA AGAACCACAG GAACCACAGC TGACTGATTG 
ATCAATCAAT CAATCTTCTG CTGCCCTGCT GCCTCACAGC CTCAGCAAGA 
CAATCAATTT TGGCCCTCTT GAGGCTCCGG CCGGTCGCCG ACTCGCCGTC 
GTCGAAGGTG CTCTCCGGCC GGCGGAGTTA ACATTGAGCT TGATTTCAAG 
CCGCGCTCCG ATCCGACCGG CAAAGCGCCG AAGCTGCCTT CCGTTTGTTT 
CACTCTGGTC TCTGGGGGCT CGCCATCAGC CATCCGTACC GAGCTGTAGT 
GTGCGCGGTT TTGTCGCGTC GTCGTACGTC GAGAATCCGT GAGCCAGACA 
GACAAGCCAG TGGTTTGGTG ATTCTTGCGG CGGCGCGGCG ATGGAGACCT 
TCGGCTGGGC CGGCGGCGGG CAGCTGATGC ACCACGACGA CATCTACTTG 
CCGCGCTCGG TGGGGTGCGG GCGGCCGTTC GAGCTGGACG ACGCGTTCCT 
GGGCGCGTGC TTCGGCGCCC AGCTCCAGTG CGACGGTGGC GTCGGCGGCG 
GCGACGGCGG CGGGTGTCTG CAGGGTACCT CGGGATTTGG CGCCGTGGCT 
GGAGACCCGT TGGGGTTGCT GTGCTCGGGG GACGTGTTTG CGTCTGTCGC 
CGAGGGCGCC GGCGGCGCGC ACGACGACGG CCTCCTCGAC GCGGCGCTCG 
CCTTCTCCCG GAATCAGCTC GGGGGCGCCG CCTGCGACGG GAGCGACGGC 
GGGGCCGTGT CGAACGGCGC CATGCTGTCC AGCTACAGCG GCACCACCGG 
CGGCAACATC TCCTCCGGCG AGTCGAATAA CTACAGCGGC GGCGGCGGTG 
GCTACGACGC CGATGTGGTG TCGCCGACGT CCACCATGTC CGCAGCCACA 
CAGTCGCTCC ACCCCAAGCG AAAGCTATAC GACGACCACC ACCACCCCGC 
CGGCATAGCA GCCGCAGCCG CAGCGCCACC GCTGGCGCCG TGCCCACGCC 
CCACCACCGG CGCCGTCGCC GCGAAGCGGA GGGCTTCCAC GTCAGCAACA 
AGCATCACCT TCGGCCACCA GCCGCACCAC CACCACGCGG GCGCCACCAC 
CGCCGGGTAC GAGCCTGACA TGGAAGCCAT GGCGCAGGTG AAGGAGATGA 
TCTACCGGGC GGCGGCCATG CGCCCCGTCC ACCTCGGCAC GGAGGCCGCC 
GCCGACAAGC CCCGCCGCAA GAACGTGCGC ATCTCGAGCG ACCCGCAGAC 
GGTGGCGGCG CGTCTCCGGC GGGAGCGCGT CAGCGACCGC CTCCGCGTCC 
TGCAGAAGCT GGTCCCCGGC GGCAACAAGA TGGACACGGC GTCCATGCTC 
GACGAGGCGG CCAGCTACCT CAAGTTCCTC AAGTCCCAGG TCCAAAAGCT 
GGAAACCCTA GGCACCACCA CCACCACGTC CAAGTTACCG CAGCAGTATT 
ACAGCGGCAA CATCAACAGC AGCAATAATC ACCATGGATT CCTCGGATTC 
GCAGCAAATA ACAACACCAT TTCAGCTGGC TACGCAAATT CTAATGCTGG 
AAATGCAACG AAACTGTTGT AGCACTGTGG CTAGCACAAG TACTTGATAC 
GCACAACGTA CGCGTGGTCT CGTCGTCTAT ATACATGTAG TAACATGCTG 
CTGTTTTCTA CTGTTTCTAG GCTTGGTGGT GATCAGTGTA CGTACACACG 
GCACATAATT GGAGTCTTAA TTAGTGGTGG AGTGCATGCT GATTTAGTTC 
GTGGTCATGT TCTTGTGCAA GATTTAGATT TATAATCTTC CGCTGGCGGA 
TCAGCTGCAT GGAGTGAGAA GTTACATCAA ATTAAAGGGG CCATCTGATG 
GTTCGTTCAA AAAAAAAAAA CGGGTGCCAT CTGATAGAGG AAAACATGTG 
GTTCAATAAT GGAAAAGAGT GGCCTGGACG AGCAATTTGC GAGTGG

Gene models with high sequence identity

AT3G21330.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
E-value: 3e-27; Score: 120.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
ProfileScan	Helix-loop-helix DNA-binding domain	11.112
superfamily	Helix-loop-helix DNA-binding	1.2e-10
HMMSmart	Helix-loop-helix DNA-binding domain	1.3e-11

See the detailed result >

AT3G21330.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G00120.1); Has 2796 Blast hits to 2791 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 2786; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013048E22 - Rice Full-length cDNAs - Original: J013048E22

full reading [+] show sequence

CCTCTTCCAT CCTTCGCTCG CTCCGCCGCC GCCGCCGCCG CCTCCTCCTC 
CTCGGCGCCT CTCCGCCGCC GCCTCAGCCA TGGTGAAGTA CTCGAGGGAG 
GCGAACAACC CCACCAAGTC CTCCAAGGCC ATGGGCCGGG ACTTGCGTGT 
GCACTTCAAG AACACCCGTG AGACAGCTTT TGCTATCAGG AAGTTGCCTC 
TGGGCAAGGC CAAGAGGTAC CTTGAGGATG TGATTGCCCA CAAGCAAGCT 
ATCCCCTTCC GTAGGTACTG CGGTGGTGTT GGCCGCACTG CTCAAGCTAA 
GTCACGCCAT TCAAACGGTC AGGGACGCTG GCCTGCCAAG TCTGCTAGAT 
TCATTCTGGA TCTTCTTAAG AATGCAGAGA GCAATGCTGA GGTGAAAGGT 
CTGGATGTTG ATACTCTTTA TGTGTCCCAC ATTCAAGTTA ACCAGGCCCA 
GAAGCAGAGG CGCCGTACCT ACCGTGCTCA TGGACGCATC AACCCTTACA 
TGTCCTCCCC GTGCCACATT GAGCTTATCC TGTCAGAGAA GGAAGAACCA 
GTGAAGAAAG AGCCTGAGTC TCAGATCGCA GCCAGGAAGG CCTAGAGAAG 
GAAGCTTTGC CCCCCTTCTG CCTGTTTGTT AGATCAGATT ATTATATAGC 
CTGTGGCTTT TGGCTGAGTG AAAATTTTGG CTGGTTGTCC GCTTGTTTGG 
CCTATCGGAA ATTCGGAATA CTACTAGCTC ATACTTCGTC AAAACCGTTA 
TCTCTGTGTA CTGAATCTAT TACTATGTTC TCAAAACGCA AATCTTGGGG 
GTGTTTGGAT TTTCTTTAAC CTGATTCGGT CGTGAACTGA TGGTTTTTCT 
TGTCGTAAGT ATGCTGTTGC ACCTGGTGTT GAACAACTAA TCTCTGTTTT 
TGAAATGGTT TTCGC

Gene models with high sequence identity

AT1G27400.1 [+] show detail - Ribosomal protein L22p/L17e family protein
E-value: 2e-73; Score: 273.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Ribosomal protein L22/L17, eukaryotic/archaeal	6.7e-89
superfamily	Ribosomal protein L22/L17	9e-58
PatternScan	Ribosomal protein L22/L17, conserved site	0
HMMPfam	Ribosomal protein L22/L17	3.4e-34
Gene3D	Ribosomal protein L22/L17	1.5e-57
HMMPanther	Ribosomal protein L22/L17, eukaryotic/archaeal	5.6e-114
HMMPanther	SODIUM-DEPENDENT PHOSPHATE TRANSPORTER SLC34A	1.9e-10
HMMPanther	SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATE	1.9e-10

See the detailed result >

AT1G27400.1

Model type: Protein coding
Short Description: Ribosomal protein L22p/L17e family protein
Computational Description: Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G67430.1); Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 321; Bacteria - 492; Metazoa - 519; Fungi - 182; Plants - 156; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).
Link: InterPro Scan - TAIR