K28344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28344

Determination of introduced cDNA(s)

  • J023042H10 - Rice Full-length cDNAs - Original: J023042H10

    full reading [+] show sequence

    Nucleotide sequence: J023042H10 - full reading
    GATGAACATG AGGACCATCA TATCCCTCAT CCCAGATACA TGATCTGTAC 
    TGTCTCCTCC TCTCTAGCTT CTCTCCTCTC CCTGCTGTGC CCCTTGCTTT
    GTTGCTTGGT CAATTAGAGC TAAGCAGCAA GCTAGCTTCC TGGAAGCAAG
    GCCGGCGCCT GGCTGGGACA AGAACCACAG GAACCACAGC TGACTGATTG
    ATCAATCAAT CAATCTTCTG CTGCCCTGCT GCCTCACAGC CTCAGCAAGA
    CAATCAATTT TGGCCCTCTT GAGGCTCCGG CCGGTCGCCG ACTCGCCGTC
    GTCGAAGGTG CTCTCCGGCC GGCGGAGTTA ACATTGAGCT TGATTTCAAG
    CCGCGCTCCG ATCCGACCGG CAAAGCGCCG AAGCTGCCTT CCGTTTGTTT
    CACTCTGGTC TCTGGGGGCT CGCCATCAGC CATCCGTACC GAGCTGTAGT
    GTGCGCGGTT TTGTCGCGTC GTCGTACGTC GAGAATCCGT GAGCCAGACA
    GACAAGCCAG TGGTTTGGTG ATTCTTGCGG CGGCGCGGCG ATGGAGACCT
    TCGGCTGGGC CGGCGGCGGG CAGCTGATGC ACCACGACGA CATCTACTTG
    CCGCGCTCGG TGGGGTGCGG GCGGCCGTTC GAGCTGGACG ACGCGTTCCT
    GGGCGCGTGC TTCGGCGCCC AGCTCCAGTG CGACGGTGGC GTCGGCGGCG
    GCGACGGCGG CGGGTGTCTG CAGGGTACCT CGGGATTTGG CGCCGTGGCT
    GGAGACCCGT TGGGGTTGCT GTGCTCGGGG GACGTGTTTG CGTCTGTCGC
    CGAGGGCGCC GGCGGCGCGC ACGACGACGG CCTCCTCGAC GCGGCGCTCG
    CCTTCTCCCG GAATCAGCTC GGGGGCGCCG CCTGCGACGG GAGCGACGGC
    GGGGCCGTGT CGAACGGCGC CATGCTGTCC AGCTACAGCG GCACCACCGG
    CGGCAACATC TCCTCCGGCG AGTCGAATAA CTACAGCGGC GGCGGCGGTG
    GCTACGACGC CGATGTGGTG TCGCCGACGT CCACCATGTC CGCAGCCACA
    CAGTCGCTCC ACCCCAAGCG AAAGCTATAC GACGACCACC ACCACCCCGC
    CGGCATAGCA GCCGCAGCCG CAGCGCCACC GCTGGCGCCG TGCCCACGCC
    CCACCACCGG CGCCGTCGCC GCGAAGCGGA GGGCTTCCAC GTCAGCAACA
    AGCATCACCT TCGGCCACCA GCCGCACCAC CACCACGCGG GCGCCACCAC
    CGCCGGGTAC GAGCCTGACA TGGAAGCCAT GGCGCAGGTG AAGGAGATGA
    TCTACCGGGC GGCGGCCATG CGCCCCGTCC ACCTCGGCAC GGAGGCCGCC
    GCCGACAAGC CCCGCCGCAA GAACGTGCGC ATCTCGAGCG ACCCGCAGAC
    GGTGGCGGCG CGTCTCCGGC GGGAGCGCGT CAGCGACCGC CTCCGCGTCC
    TGCAGAAGCT GGTCCCCGGC GGCAACAAGA TGGACACGGC GTCCATGCTC
    GACGAGGCGG CCAGCTACCT CAAGTTCCTC AAGTCCCAGG TCCAAAAGCT
    GGAAACCCTA GGCACCACCA CCACCACGTC CAAGTTACCG CAGCAGTATT
    ACAGCGGCAA CATCAACAGC AGCAATAATC ACCATGGATT CCTCGGATTC
    GCAGCAAATA ACAACACCAT TTCAGCTGGC TACGCAAATT CTAATGCTGG
    AAATGCAACG AAACTGTTGT AGCACTGTGG CTAGCACAAG TACTTGATAC
    GCACAACGTA CGCGTGGTCT CGTCGTCTAT ATACATGTAG TAACATGCTG
    CTGTTTTCTA CTGTTTCTAG GCTTGGTGGT GATCAGTGTA CGTACACACG
    GCACATAATT GGAGTCTTAA TTAGTGGTGG AGTGCATGCT GATTTAGTTC
    GTGGTCATGT TCTTGTGCAA GATTTAGATT TATAATCTTC CGCTGGCGGA
    TCAGCTGCAT GGAGTGAGAA GTTACATCAA ATTAAAGGGG CCATCTGATG
    GTTCGTTCAA AAAAAAAAAA CGGGTGCCAT CTGATAGAGG AAAACATGTG
    GTTCAATAAT GGAAAAGAGT GGCCTGGACG AGCAATTTGC GAGTGG

    Gene models with high sequence identity

    1. AT3G21330.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 3e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan Helix-loop-helix DNA-binding domain 11.112
    superfamily Helix-loop-helix DNA-binding 1.2e-10
    HMMSmart Helix-loop-helix DNA-binding domain 1.3e-11

    See the detailed result >

    AT3G21330.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G00120.1); Has 2796 Blast hits to 2791 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 2786; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013048E22 - Rice Full-length cDNAs - Original: J013048E22

    full reading [+] show sequence

    Nucleotide sequence: J013048E22 - full reading
    CCTCTTCCAT CCTTCGCTCG CTCCGCCGCC GCCGCCGCCG CCTCCTCCTC 
    CTCGGCGCCT CTCCGCCGCC GCCTCAGCCA TGGTGAAGTA CTCGAGGGAG
    GCGAACAACC CCACCAAGTC CTCCAAGGCC ATGGGCCGGG ACTTGCGTGT
    GCACTTCAAG AACACCCGTG AGACAGCTTT TGCTATCAGG AAGTTGCCTC
    TGGGCAAGGC CAAGAGGTAC CTTGAGGATG TGATTGCCCA CAAGCAAGCT
    ATCCCCTTCC GTAGGTACTG CGGTGGTGTT GGCCGCACTG CTCAAGCTAA
    GTCACGCCAT TCAAACGGTC AGGGACGCTG GCCTGCCAAG TCTGCTAGAT
    TCATTCTGGA TCTTCTTAAG AATGCAGAGA GCAATGCTGA GGTGAAAGGT
    CTGGATGTTG ATACTCTTTA TGTGTCCCAC ATTCAAGTTA ACCAGGCCCA
    GAAGCAGAGG CGCCGTACCT ACCGTGCTCA TGGACGCATC AACCCTTACA
    TGTCCTCCCC GTGCCACATT GAGCTTATCC TGTCAGAGAA GGAAGAACCA
    GTGAAGAAAG AGCCTGAGTC TCAGATCGCA GCCAGGAAGG CCTAGAGAAG
    GAAGCTTTGC CCCCCTTCTG CCTGTTTGTT AGATCAGATT ATTATATAGC
    CTGTGGCTTT TGGCTGAGTG AAAATTTTGG CTGGTTGTCC GCTTGTTTGG
    CCTATCGGAA ATTCGGAATA CTACTAGCTC ATACTTCGTC AAAACCGTTA
    TCTCTGTGTA CTGAATCTAT TACTATGTTC TCAAAACGCA AATCTTGGGG
    GTGTTTGGAT TTTCTTTAAC CTGATTCGGT CGTGAACTGA TGGTTTTTCT
    TGTCGTAAGT ATGCTGTTGC ACCTGGTGTT GAACAACTAA TCTCTGTTTT
    TGAAATGGTT TTCGC

    Gene models with high sequence identity

    1. AT1G27400.1 [+] show detail - Ribosomal protein L22p/L17e family protein
      E-value: 2e-73; Score: 273.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L22/L17, eukaryotic/archaeal 6.7e-89
    superfamily Ribosomal protein L22/L17 9e-58
    PatternScan Ribosomal protein L22/L17, conserved site 0
    HMMPfam Ribosomal protein L22/L17 3.4e-34
    Gene3D Ribosomal protein L22/L17 1.5e-57
    HMMPanther Ribosomal protein L22/L17, eukaryotic/archaeal 5.6e-114
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER SLC34A 1.9e-10
    HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATE 1.9e-10

    See the detailed result >

    AT1G27400.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L22p/L17e family protein
    Computational Description
    Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G67430.1); Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 321; Bacteria - 492; Metazoa - 519; Fungi - 182; Plants - 156; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR