K28401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28401

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28401

Determination of introduced cDNA(s)

  • J023106J06 - Rice Full-length cDNAs - Original: J023106J06

    full reading [+] show sequence

    Nucleotide sequence: J023106J06 - full reading 
    GACTCCCCCA CGCCACCGCT CGCCGCCGCC GCCGGCTCAG CTTCTCCTCC 
    TCCTCCGCCG CCGCCGCCGC CGTCCTCGGG TGAAGCAGCG CAGTTCGGAG 
    GAGGGAGGCG GAGGGGGTTT GTTCGCCAAC CTAGCTCGCT CGCTCAGCTG 
    CCGAGCTCTT CTTCGCTGGT CTTTGAGAGA TGAAATTTTA GTGATATCAG 
    CTGCTAGAGG ATAGACTGAA GTAACTTTCA ACAATTATAG AATGGGTGGT 
    TGCTGTTGTT CATCGACAAG ATCTGCATCC GTCGGAGCAC CAGTTTATAT 
    CTATCATCAA CAAAATCCGG CCTCTACAAT TGTTGCAATA GACAAAAATC 
    TGGATACATC CACTCCTGAC ACTTACCGAG CACCACCTAC ACCTTTGCCT 
    TATGATGTTG GTCTAGTGTT GAAAGATAAC CCTGATTTGG AGAAGACAGG 
    CATCAAGAGG AAAATTCATG AACATAAGGA GTCCTTAATG ATGGATGATA 
    ATGAGTCATT GCAAAAATGT GTCTCTGAAG ATAAGCCTGA TGAGGAGGAT 
    GTTTGCCCAA TCTGTCTTGA AGAATATGAT GAAGAAAATC CCCGCTCTAT 
    GACTAAATGT GAGCATCATT TTCATCTTTG CTGCATACTT GAGTGGATGG 
    AGCGGAGTGA AACTTGCCCA GTTTGTGACC AGATAACCAT GATAAATGCG 
    ATGTATGAAT AGCCTTGGTG GCCCTGGTGG ATCCTCTCTT GAAGCTCATG 
    CTTATTCAGT CGGTTTGGCA GAAGTCATTT GATGGGGAAG CACAATGAGC 
    AACTGCTCTG CTCTCGACAT TGGTTTGGTC TTTTTTGGTG GAAGGAGTGA 
    AATTAAGGAG ACAAATGACA TGAAATGTTC TGGCCAACAC TGTTTTGTAC 
    CTTTGTTGCC AATCTTTGGC TAATTTATAG CAAGTAGCAA CAGGAGGATT 
    AGGAAAATGC TTGGATGCGA TATACATACC GGTCACATGA TCATTCAGTC 
    ATTCGGTTCA AAGTCCAAAC ATTAAAAATC AGCTCTTTTT TTGTTTAAAC 
    TTAGGACGAA TGTTACTTCA CTTCTAATCC AGTTAGTGTC TGTGTATATC 
    ATACATAACA TAGGTGAAAA AGAAAAATTG GTCGTAGTCT CTCAGTCTAG 
    GCTTCATTTG TATAATACTT CTAGTTGGAC AAGCTCCTGA ATACATCCCT 
    TCCTATTTCC TATTTCCT

    Gene models with high sequence identity

    1. AT5G41350.1 [+] show detail - RING/U-box superfamily protein
      E-value: 1e-28; Score: 124.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 9.7e-15
    ProfileScan Zinc finger, RING-type 12.43
    HMMPfam Zinc finger, C3HC4 RING-type 3.9e-07
    HMMPanther ZN/RING FINGER PROTEIN 2 2.4e-08
    HMMPanther RING FINGER CONTAINING PROTEIN 2.4e-08
    HMMSmart Zinc finger, RING-type 1.2e-06
    Gene3D no description 1.6e-10

    See the detailed result >

    AT5G41350.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger B1A (TAIR:AT4G00335.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR