K28410

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28410

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28410

Determination of introduced cDNA(s)

  • J023101D03 - Rice Full-length cDNAs - Original: J023101D03

    full reading [+] show sequence

    Nucleotide sequence: J023101D03 - full reading 
    GCCACTCGAA GAGCTCGGCG GTGGAACAGC TCGCTCGATC ATGGCCGCCG 
    CCGCCGCCGC CTCAAGGGCG CTCTGGGCTT GCCGCACCGC CTCCTACCTT 
    CGGATCTCCT CCTTCCCCAG GGCTTTCTCC ACCGTCCTTA AAGATCTAAA 
    ATATGCTGAT ACTCATGAGT GGGTGAAGGT TGAGGGTGAT TCAGCAACCA 
    TAGGGGTCAC AGACCATGCT CAGGACCATT TGGGTGATGT TGTGTATGTT 
    GAGCTTCCAG AAGTTGGTTC CACAGTATCA CAAGGAACGA ACTTTGGTGC 
    GGTTGAAAGT GTGAAAGCAA CCAGTGATAT CAATGCACCA GTATCTGGAG 
    AGATTATTCA AGTAAATGAT GAACTAAGTG AAAAACCAGG ATTTATAAAT 
    GGAAGTCCAT ATGAGAAGGG ATGGATCATC AAGGTTAAGA TAAGTGATCC 
    AAGTGAGTTA AACTCGCTGA TGGATGATGA GAAGTACAAG AAGTTTTGTG 
    AGGAAGAAGA TGGCAAACAC TGATCAATCC CCTAACTGCT GGATTTCAAG 
    AAACTATGCA GCAACTCACC ATCATGACAA TGAGCCATCT CGCCTCTCCT 
    ACCACATTAT ATTATTCTGG ATAGAGGAGT CCCAAGGAAT GTAATAAGCT 
    GAAACATTTT TCTTGCAAAT CAGACATGAA AATTTTGTAG TGTCCTGATC 
    ATTCCGTTTG TGCTCCATTT GAAATTCAGC TCTTGATTTG CTTATCATCT 
    GAATACAGGT GGAGGATTGG GTTTGTTTAA ACTTTGATTA AGTGACAGTG 
    ACTTGATTGT ATTGAGATTG C

    Gene models with high sequence identity

    1. AT2G35120.1 [+] show detail - Single hybrid motif superfamily protein
      E-value: 1e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycine cleavage H-protein 1.1e-49
    HMMPanther Glycine cleavage H-protein 2.4e-66
    superfamily Single hybrid motif 3.2e-48
    HAMAP Glycine cleavage H-protein 29.41
    Gene3D no description 2.9e-48
    HMMTigr Glycine cleavage H-protein, subgroup 6.1e-68
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0

    See the detailed result >

    AT2G35120.1

    Model type
    Protein coding
    Short Description
    Single hybrid motif superfamily protein
    Computational Description
    Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7147 Blast hits to 7147 proteins in 2201 species: Archae - 168; Bacteria - 4552; Metazoa - 187; Fungi - 130; Plants - 205; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033036L21 - Rice Full-length cDNAs - Original: J033036L21

    full reading [+] show sequence

    Nucleotide sequence: J033036L21 - full reading 
    GAGCTCATCT CCTTCCTTCT CATCCCCATC TCCACTCACT CCCCAAACCC 
    AATTTCCTCC CCGTCACGAG CAAGGCGCGA GCCCGGCCGC GAGCGTCGAG 
    CAAGCAGCGC TCCACCATCG TCTCCCCTCC GCCCGCCGTT GTCTCGATCC 
    CCTCTGCTCG TCGCATGCCG CTGTACAAAA CAAACCACCA TCTGTCACCG 
    TCTCTTCTCC TCCCCGCTTC ACCAATCAAT CCAAACCCTA GAGCAATACC 
    CCTTGCTGGA ATCGCTCGCA CCCTAGAGCT CCAGTTCCCA CCCCAGCCAC 
    GGCGGATCAG GGGCAGTCTG GTCTGCTGCC GCAGCGATAT CGTGCGCCCC 
    GGATTTGAGA GTTCCAATGC CGATTTCGTA CGTGGTCGTG GTCCCTGGGT 
    GGATTATCGG ACAGTGAGAT TCTTCTCTAC TGACTTTGAT TTGTTTTCTT 
    TGATTTTGCT TCCCGGATGA TGTTGGATGT GGTTCGTGTT CAGGAACCTT 
    TGCGCCAAGG CTTCGGTTTT GCGTGGTTCT TGGATCCGGT TAGAGTAGGT 
    TGTGGTTTGT GTCGGCCGTC ACGCCATCCG TCCTCATGGT CGCGCAAACC 
    AGCAGCAGTT GTTGTCATTT TTCCGCTGAG TGTGATGCCT CTTCTCACGG 
    CCAAACCAGT CACGAATGCT ATACAGATAG AACCAAGGGC AAATCGGTCT 
    TTCTCCGTAC GAACTCACGG CTAAACACTT GATCTGAGCA GCAGCAGTGA 
    CGGAAGTGCT ACCGATCGAA GAAAAACAAG TGGCCAATGC TTCTAGTCGA 
    AAGCGGGAAG TTTCCATGCT ATTTTTTGGT TACCGACTTG TTTTCTATGC 
    TATAGATCGA ATTTTCTCAA AAAGAAACCT CTCGTTGTCT CCTCCGCTCC 
    TTGCCTCCTT GCGCCGCCGC CAAGACGAGT GGCGGCTGAA CAAGGGAGGG 
    CCGGGCGGCG ATCTCCATCG CAGCGGAGGG GAGGGGATCC TGGTGCGTCT 
    TCTTTCTGAT TCATCTCTCT CTCTCTCTCC CACCCCACCG GGACTGGAAT 
    TTGCGGGATT GCGTTCGTAA ACCCTACTAG CTTCTCTTCT AGATCTTCTC 
    CTCCTCCTTA ATTTGATAGC CTTAAACCTC TCTTAAATAA ATAATTCAAG 
    TAATAACAGT TTGTTTGTTC ACCCAAAAGT TTGGGGGTTC AACTGAACCC 
    CCATGTCCCA AGTTGGATCC GCCCCTGTGT CGAGGTCTTG GTGGTGGTGG 
    GTACCATTTC AGAATCAAAC CTCATTTCCC ATGCATAAAA TAGTATGTAT 
    AGTGTGTTTA CTTAATTTTA GGAGAGAAAT AGAATGCTCC ATTCACACAT 
    ACTAGCACTC ATTTTGTCAT CAGTAATGGA GATGTCATCA CTACTACTCC 
    CCATGCCATG CAAAATAAAT ATCCATATTA CCGTTTCATT GCCCACATTA 
    TGATCTTTAA TTCGGAAATA ATAAGGCATT GCAGCGAGAA ATCCATGGCA 
    TGGGGAGGTC TCTTCTTGAG CTTCAGCCGT CCCTCACAGG ACCAACAGAA 
    GTCATGCCTT TCAGCTGCTG GTGGTTTCAA CTATGATGCG CCTCTCCATG 
    GTGCCTCAAG ACCAAAATCA GTAGCTAAAT TGACTGCGGG AGATACTGAA 
    GCAAGTGACA AAGCGCTTGT CGAGCGCGGC TTCTTCGTGA ACCGTTCACG 
    TGTTCTGGTT GGCTCTGGCA CTACCACCTT CAACCATGCC AAATCCGCGC 
    TTCTCTCCTG GAAGCATTTG GCACTAGGCT GGGCAAATGT GGAACCCGAC 
    ACACCGGTGA AGGCTGGAAC AAGGTTCTGC ATTTGTTACA AGGAGCTGAT 
    CCCTTGGGTC ATGTTGCCCC TCCAGATTGC CTATGTGACC GATGGCAATG 
    GAGGCAACTC CTCAGGCCAT GGAAAAGGCT GCGTTTTTGC TTATGGTAGC 
    GGCACTCTAC AAGGCCATCT GCTGGCAGGG GAGGAGAGGT TCTCGGTGCA 
    GCTGGACGAA GACGATCAGG TGTGGTACGA GGTGATGTCC TTCTCGAAGC 
    CAGCACACAT CCTGTCCAGC CTCTGCTACC CGTACGTGCA GCTGAGGCAG 
    AAGCATTTCG CGCATCAGTC AGGGCAGGCA CTGCTCAGGC ATGTTGCCAG 
    CCGCTCCAGG GACACACGGT GATCGACTTC GTCTGCAGAT TTGATCTTTT 
    CTTCAGGAGT AGTCTTCGCA TGTTGTGAGT GAGCCTGCTT GTATGTTCCT 
    GTATCTATGT CCGAATCTGC TCCTGAGAGC ATTATTAGTT TGTAGTTTGA 
    ATTTTTGAGC TCAGGGTAAT TATTTAGCAT TTGTGCTTTG TTGTTAAGTT 
    TTAGATCAAA TTGAGGTGTT ATGGTGATGT AAATTCAGAT TTCCATGGTT 
    TGTTACTAAA TCAAAAGGAA GAATGAAAGA TAAGCACAAG AGG

    Gene models with high sequence identity

    1. AT2G17695.3 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS Inter...
      E-value: 3e-58; Score: 224.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G17695.3

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960).
    Link
    InterPro Scan - TAIR