K28410

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28410

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28410

Determination of introduced cDNA(s)

  • J023101D03 - Rice Full-length cDNAs - Original: J023101D03

    full reading [+] show sequence

    Nucleotide sequence: J023101D03 - full reading
    GCCACTCGAA GAGCTCGGCG GTGGAACAGC TCGCTCGATC ATGGCCGCCG 
    CCGCCGCCGC CTCAAGGGCG CTCTGGGCTT GCCGCACCGC CTCCTACCTT
    CGGATCTCCT CCTTCCCCAG GGCTTTCTCC ACCGTCCTTA AAGATCTAAA
    ATATGCTGAT ACTCATGAGT GGGTGAAGGT TGAGGGTGAT TCAGCAACCA
    TAGGGGTCAC AGACCATGCT CAGGACCATT TGGGTGATGT TGTGTATGTT
    GAGCTTCCAG AAGTTGGTTC CACAGTATCA CAAGGAACGA ACTTTGGTGC
    GGTTGAAAGT GTGAAAGCAA CCAGTGATAT CAATGCACCA GTATCTGGAG
    AGATTATTCA AGTAAATGAT GAACTAAGTG AAAAACCAGG ATTTATAAAT
    GGAAGTCCAT ATGAGAAGGG ATGGATCATC AAGGTTAAGA TAAGTGATCC
    AAGTGAGTTA AACTCGCTGA TGGATGATGA GAAGTACAAG AAGTTTTGTG
    AGGAAGAAGA TGGCAAACAC TGATCAATCC CCTAACTGCT GGATTTCAAG
    AAACTATGCA GCAACTCACC ATCATGACAA TGAGCCATCT CGCCTCTCCT
    ACCACATTAT ATTATTCTGG ATAGAGGAGT CCCAAGGAAT GTAATAAGCT
    GAAACATTTT TCTTGCAAAT CAGACATGAA AATTTTGTAG TGTCCTGATC
    ATTCCGTTTG TGCTCCATTT GAAATTCAGC TCTTGATTTG CTTATCATCT
    GAATACAGGT GGAGGATTGG GTTTGTTTAA ACTTTGATTA AGTGACAGTG
    ACTTGATTGT ATTGAGATTG C

    Gene models with high sequence identity

    1. AT2G35120.1 [+] show detail - Single hybrid motif superfamily protein
      E-value: 1e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycine cleavage H-protein 1.1e-49
    HMMPanther Glycine cleavage H-protein 2.4e-66
    superfamily Single hybrid motif 3.2e-48
    HAMAP Glycine cleavage H-protein 29.41
    Gene3D no description 2.9e-48
    HMMTigr Glycine cleavage H-protein, subgroup 6.1e-68
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0

    See the detailed result >

    AT2G35120.1

    Model type
    Protein coding
    Short Description
    Single hybrid motif superfamily protein
    Computational Description
    Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7147 Blast hits to 7147 proteins in 2201 species: Archae - 168; Bacteria - 4552; Metazoa - 187; Fungi - 130; Plants - 205; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033036L21 - Rice Full-length cDNAs - Original: J033036L21

    full reading [+] show sequence

    Nucleotide sequence: J033036L21 - full reading
    GAGCTCATCT CCTTCCTTCT CATCCCCATC TCCACTCACT CCCCAAACCC 
    AATTTCCTCC CCGTCACGAG CAAGGCGCGA GCCCGGCCGC GAGCGTCGAG
    CAAGCAGCGC TCCACCATCG TCTCCCCTCC GCCCGCCGTT GTCTCGATCC
    CCTCTGCTCG TCGCATGCCG CTGTACAAAA CAAACCACCA TCTGTCACCG
    TCTCTTCTCC TCCCCGCTTC ACCAATCAAT CCAAACCCTA GAGCAATACC
    CCTTGCTGGA ATCGCTCGCA CCCTAGAGCT CCAGTTCCCA CCCCAGCCAC
    GGCGGATCAG GGGCAGTCTG GTCTGCTGCC GCAGCGATAT CGTGCGCCCC
    GGATTTGAGA GTTCCAATGC CGATTTCGTA CGTGGTCGTG GTCCCTGGGT
    GGATTATCGG ACAGTGAGAT TCTTCTCTAC TGACTTTGAT TTGTTTTCTT
    TGATTTTGCT TCCCGGATGA TGTTGGATGT GGTTCGTGTT CAGGAACCTT
    TGCGCCAAGG CTTCGGTTTT GCGTGGTTCT TGGATCCGGT TAGAGTAGGT
    TGTGGTTTGT GTCGGCCGTC ACGCCATCCG TCCTCATGGT CGCGCAAACC
    AGCAGCAGTT GTTGTCATTT TTCCGCTGAG TGTGATGCCT CTTCTCACGG
    CCAAACCAGT CACGAATGCT ATACAGATAG AACCAAGGGC AAATCGGTCT
    TTCTCCGTAC GAACTCACGG CTAAACACTT GATCTGAGCA GCAGCAGTGA
    CGGAAGTGCT ACCGATCGAA GAAAAACAAG TGGCCAATGC TTCTAGTCGA
    AAGCGGGAAG TTTCCATGCT ATTTTTTGGT TACCGACTTG TTTTCTATGC
    TATAGATCGA ATTTTCTCAA AAAGAAACCT CTCGTTGTCT CCTCCGCTCC
    TTGCCTCCTT GCGCCGCCGC CAAGACGAGT GGCGGCTGAA CAAGGGAGGG
    CCGGGCGGCG ATCTCCATCG CAGCGGAGGG GAGGGGATCC TGGTGCGTCT
    TCTTTCTGAT TCATCTCTCT CTCTCTCTCC CACCCCACCG GGACTGGAAT
    TTGCGGGATT GCGTTCGTAA ACCCTACTAG CTTCTCTTCT AGATCTTCTC
    CTCCTCCTTA ATTTGATAGC CTTAAACCTC TCTTAAATAA ATAATTCAAG
    TAATAACAGT TTGTTTGTTC ACCCAAAAGT TTGGGGGTTC AACTGAACCC
    CCATGTCCCA AGTTGGATCC GCCCCTGTGT CGAGGTCTTG GTGGTGGTGG
    GTACCATTTC AGAATCAAAC CTCATTTCCC ATGCATAAAA TAGTATGTAT
    AGTGTGTTTA CTTAATTTTA GGAGAGAAAT AGAATGCTCC ATTCACACAT
    ACTAGCACTC ATTTTGTCAT CAGTAATGGA GATGTCATCA CTACTACTCC
    CCATGCCATG CAAAATAAAT ATCCATATTA CCGTTTCATT GCCCACATTA
    TGATCTTTAA TTCGGAAATA ATAAGGCATT GCAGCGAGAA ATCCATGGCA
    TGGGGAGGTC TCTTCTTGAG CTTCAGCCGT CCCTCACAGG ACCAACAGAA
    GTCATGCCTT TCAGCTGCTG GTGGTTTCAA CTATGATGCG CCTCTCCATG
    GTGCCTCAAG ACCAAAATCA GTAGCTAAAT TGACTGCGGG AGATACTGAA
    GCAAGTGACA AAGCGCTTGT CGAGCGCGGC TTCTTCGTGA ACCGTTCACG
    TGTTCTGGTT GGCTCTGGCA CTACCACCTT CAACCATGCC AAATCCGCGC
    TTCTCTCCTG GAAGCATTTG GCACTAGGCT GGGCAAATGT GGAACCCGAC
    ACACCGGTGA AGGCTGGAAC AAGGTTCTGC ATTTGTTACA AGGAGCTGAT
    CCCTTGGGTC ATGTTGCCCC TCCAGATTGC CTATGTGACC GATGGCAATG
    GAGGCAACTC CTCAGGCCAT GGAAAAGGCT GCGTTTTTGC TTATGGTAGC
    GGCACTCTAC AAGGCCATCT GCTGGCAGGG GAGGAGAGGT TCTCGGTGCA
    GCTGGACGAA GACGATCAGG TGTGGTACGA GGTGATGTCC TTCTCGAAGC
    CAGCACACAT CCTGTCCAGC CTCTGCTACC CGTACGTGCA GCTGAGGCAG
    AAGCATTTCG CGCATCAGTC AGGGCAGGCA CTGCTCAGGC ATGTTGCCAG
    CCGCTCCAGG GACACACGGT GATCGACTTC GTCTGCAGAT TTGATCTTTT
    CTTCAGGAGT AGTCTTCGCA TGTTGTGAGT GAGCCTGCTT GTATGTTCCT
    GTATCTATGT CCGAATCTGC TCCTGAGAGC ATTATTAGTT TGTAGTTTGA
    ATTTTTGAGC TCAGGGTAAT TATTTAGCAT TTGTGCTTTG TTGTTAAGTT
    TTAGATCAAA TTGAGGTGTT ATGGTGATGT AAATTCAGAT TTCCATGGTT
    TGTTACTAAA TCAAAAGGAA GAATGAAAGA TAAGCACAAG AGG

    Gene models with high sequence identity

    1. AT2G17695.3 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS Inter...
      E-value: 3e-58; Score: 224.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G17695.3

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960).
    Link
    InterPro Scan - TAIR