K28411

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28411

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K28411

Determination of introduced cDNA(s)

  • J023041D04 - Rice Full-length cDNAs - Original: J023041D04

    full reading [+] show sequence

    Nucleotide sequence: J023041D04 - full reading 
    GGTCGTCGCT TCGTATTCCA TTTTTCCGCT TTCCTCTCTC CCCCGAATCC 
    CCAATTCGCC CTAAACCCTG CTAGAACAGC GGCGAGCAGT GTCCTGCCAT 
    GGCCACCGCC GCCTGCGGCG AGAGCCCTTC GCGGTTGGGC TCCGCCTCCG 
    CCATCGTCGC CGACACGGAG ACCAGGTACC ACCTCCTCAA GATCGGCTGC 
    TACTCGCGCA CCAAGGCGAC GACCCCCACC GGCTCCTTCC TCAGTTCCGG 
    CCAGTTCACC GTCGGCGGCC ACCGCTGGCG CATCAATTAC TACCCCAATG 
    GGGAAAGCGC CGACTCCGCG GATTACATAT CGCTTTACCT CTTGCTAGAC 
    GACAAGGCCA CCAATAGCAG TGTGAAGGTG CAGGCACAGT TCAAGTTCCA 
    GATTAGTTCC ACCGACCAGG TGAAGAACAC ACCTTCATTG GCATCCACGA 
    ATGTAAATAC ATATGGTGAG GATTCTAGCT GGTCTTGGGG TCACAGAAAG 
    TTCATCAAAC GGGAAGATTT CGAGAAGTCC AATGATCTCA GGGACGACTC 
    CTTCACCATC CGGTGCGACG TAGCGGTTAT CGGAGAGATC CGAACTGAGA 
    AGACGACCGA GATCCCATCA GCCACAACAT TCGTCACTGT ACCCCCGTCT 
    GACCTGAACC AGCAGCTCGT CGACCTGCTG GAGACCGAGA AGGGCGCCGA 
    CGTGGTGTTT GAGGTCAGCG GTGAGACGTT CGCGGCGCAC AGATGCTTGC 
    TAGCAGCCCG GTCGCCGGTA TTCAGCGCGG AGCTCTACGG CTTGATGAAG 
    GAGGGCGACA CCGCCGGAGT CGTGCGTATC GAAGACATGG AGGCGCAGGT 
    GTTCAAGCTG TTGCTCCGCT TCATGTACAC CGACTCGTTA CCAAAGATGG 
    AGGAGGAAGA CGTCATGTGG CAACATCTGC TTGTCGCGGC AGATCGGCAT 
    GATCTACAGA GGCTCAAGCT GATCTGCGAG GACAGGTTGT GCAACTACAT 
    TGGCGTCAGC ACGGTGTTGA ACATCCTGGT GCTTGCTGAT CAGCATCACT 
    GCGACGGGCT GAAGAAGGCG TGTTTTAGTT TTCTTGGCTC ACTGGAGAAC 
    CTGAGTGCTG TTGTCACCGG CGATGGCTTG GAGCATCTGA GCAGGAGCTA 
    CCCCTCTCTT ATGAAAGAAC TATTTGTTGT GATGGCACTT CCACCGAATC 
    ATGGTTAATA TTCTTGTGCT CTAGCAATGA TAGTTGTTGG TTTCTCAATC 
    TGAAGTTCTG AACCTTTCTC ATCAGGTAGA TATGTTATCT TCTTTTAGCA 
    CGCAGGCATG GTGCTGTACT CCCTGTGTAT ATATGCTTTT GTTATCAGGT 
    ATACTATGAA AACC

    Gene models with high sequence identity

    1. AT5G19000.1 [+] show detail - BTB-POZ and MATH domain 1
      E-value: 6e-64; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart MATH 0.0034
    HMMSmart BTB/POZ-like 5e-22
    Gene3D TRAF-type 2.9e-05
    Gene3D BTB/POZ fold 6e-23
    HMMPfam BTB/POZ 1.2e-21
    HMMPfam MATH 7.2e-12
    superfamily TRAF-like 7.3e-34
    superfamily BTB/POZ fold 8.3e-30
    ProfileScan BTB/POZ-like 17.5
    ProfileScan MATH 23.05
    HMMPanther BTB-RELATED 1.2e-67
    HMMPanther Kelch related 1.2e-67

    See the detailed result >

    AT5G19000.1

    Model type
    Protein coding
    Short Description
    BTB-POZ and MATH domain 1
    Computational Description
    BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR