K28425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28425

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28425

Determination of introduced cDNA(s)

  • J023023L10 - Rice Full-length cDNAs - Original: J023023L10

    full reading [+] show sequence

    Nucleotide sequence: J023023L10 - full reading
    GTCCGTCTCC GCCTCTCTCG CTCGCGCCGC CGGCCGCCGG CGATCCTCCC 
    GCCGGAGCAC GCTCGCCTGA CCTGGCTGCC TCCGCCGCTT CGAATCGAAG
    CCCGCAGCTC CCCTCCCTCT CTTCCTCTCC AGACAGTCCC CTACTCCCCT
    CTGCTGCACT GGACTTGGGG TGGGGTGGAG CGGGAGATCC ATCCAAGATA
    GCTCGGATGA GAACAAGTAC CTGAGGTCCC CTCCGATTAT TCTCCAGAAG
    GTTGTAGAAG CTTGGAGGAT GCCGAGGCGG GAGGGTGGTC GCTCTCGCTC
    CGCCGCCTAC CTCGTCCTCT TCGCTTCCTG CCTTTTAGCT GTTGCGGCGG
    CATCACACCA GGAATTTCAT GAAGCTGCTG GATCCAGAAC TCTTCTTATG
    TCACATGAAC ACACAAATCA AGTGCATTGC TCAAGGGAAA GAAGCCGTGC
    AGCTTGGAAA GCTATTGATG AGTATTTGAT GCCCTTTGTG GAAAAAGAGA
    AATATGAACT CCCAAGCAAA TGTAGACTTC ATCCTGGTAA TGACATGTTT
    CGGGAACAGG AGCAGCATAA GATTCACTTT GATATAAATG AATGGCGCTG
    TGGTTTCTGC AAGAAAGCCT TCCGAGCAGA GAAGTTCCTT GATCAGCATT
    TTCACAATCG GCACAATAAT CTTGTGGATA ATAGTCAAGG AAGATGCTTG
    GCTGATCTAT GTGGAGCACT TCACTGTGAT CTGATGTTGG AGTTTAAGAA
    ACCAAAGAGT AAATGCAGTG CAACTGCAGC TGCAAGGAAT CGTCATCTTT
    GTGAGAGCCT TGCAGATAGT TGCTTTCCTA TTAATCAAGG GCAATCTGCC
    AGCCGTCTTC ATGAATTTCT CTTGCGCCAA TTCTGTGATG CCCACACATG
    CAAGAATGGC TCTAAACCTT TCCCCAAAGG TGGCAGGAAA CAAACAAACA
    GATTCTACCT GGCTCTCTGT GCCTTAACAA TAGTACTTTT GCCACTGTTC
    TATCTCATAG TATTCTTGCA CCAGAGGGAA ATGAAGAAAG GCGGTCAAAA
    TTTAAGACGA ATTTCGAAAG TTGTCCAAAA GAAAAAACCA TCTTAGGTAC
    CTAATTCCAT GCCCTGCTTC TTCCCTATGC AGCCCCTCAT GCAGATGCAA
    TCGTCAAGAA GCAAACGTGT GCTTTTTATG TGAGGTCAAG CAAGATAATT
    TTTCGATGCC TTGCCCAAGC TGGAGTCTTG TTGACCTCTG TAGTTCATCC
    CTTGAAATGT GGGTTTACAT GACCGTTTAC AGACAATCTC ATGAGACTAT
    ATGTACATTG AAGAATGAAA ATGTGTATCC AATATTTAGT AGGCTCTAAT
    TTGAATCCTA TGGGCTTAGA TTAATGGAAT AGAAACATCC CCATATAATT
    TGTAATATTT GCAAGAGGCT TGGAGGTAAT TGTCATT

    Gene models with high sequence identity

    1. AT5G63280.1 [+] show detail - C2H2-like zinc finger protein
      E-value: 2e-91; Score: 333.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER PROTEIN-RELATED 1.9e-77
    PatternScan Zinc finger, C2H2-type 0

    See the detailed result >

    AT5G63280.1

    Model type
    Protein coding
    Short Description
    C2H2-like zinc finger protein
    Computational Description
    C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR