K28426

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28426

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28426

Determination of introduced cDNA(s)

  • J023106G11 - Rice Full-length cDNAs - Original: J023106G11

    full reading [+] show sequence

    Nucleotide sequence: J023106G11 - full reading 
    GCTCCCCCCC ATCACCACCA CTCCTCCGCC GCGTCGCCGT CGCCGTCACC 
    GACAAGCCTC GCCTCTCCTC GCCGGTTCGC CGTCGCGGCC GCCTCCTTTG 
    TCCGCTCCAG CGCCCTCCTC GGCCCGGATC GGCCCTTCCC CAGATGGAGA 
    GGGCACTTGA TTCCTTGACG TACAAAGGCT CCATTCCAGA CGCTATCCTT 
    CAGTCAAGAA GGGATAACAA ACTCTTTGTA GTGTACATAT CAGGTGAAGA 
    TGAGACTTCG AGTAGTTTGG AACAGTCGAC ACTTGTTAAT GAAAGTGTGG 
    CTGAAGTGAT AGGCAACTGT TGCGTATTCC TGCATCTAAA ACAAGGCAAC 
    GTCGATGCAT CCCAATTTTC AGCTATATAT CCACAGAAGG CTATCCCAAG 
    TATATCTGTC ATTGGACAGA ATGGTGTTAT GCTATGGTGT CATGAGGGAT 
    ACATCAGCTC GAAAGATCTG AAAGAAAATA TTGAGAAAGC TTGGGCTACC 
    CTTCACCTGC AGGGTACAGC AGCAGCCTTT CTGACTGCAT CACTTGCTTC 
    AAGAATGACT GAACCTGTGA ATACCACCCC GACCACTCTA CCTACTCAAG 
    GAGGCTCATC TGCTGCAGAG AATCCCTCTA CTTCATCAAA TCAATCTACA 
    GGAACTTCTG GAGCCAGTGG GTTTGCTAAT CCTACTGATT CGGTGGCACA 
    GCCACCTAGA AGCACAAGCC GTGATGAAAC TCCCAGCATA AGTGAAAAAG 
    AATCCTCAAA TTTGGATTCA AGTCCAGGTA ATAGAACTGT TCAAGAAAGG 
    CCAGATTCAG ATAGTGCGCA AGTTAAAGGT TCTTTGCCTG ATCATCCAAG 
    GAGCTCAAAT ATAGAAGGTT GTGCAAATCC AGTTCAATCA GGCAATACAG 
    CATCACTAAA ACAGAAAAAT AAAGTGGATG ATGGTTTCAC CAAAGTTTCC 
    TCAGAGTCAG TTCCTACCAG AGTAGCTAGT AGAGGTAAAT CGTCAAAGGT 
    AGCTGTGGAT CAAGACAAGG CAACAACCAC TAGCACCCCT ATTGAACCTG 
    CCCCTGTGAG GTCAAATGAT ATTCAGCTGG TCGTTCGCAT TCCTGATGGA 
    CCTAGTCTGC AGATTAAACT GACAAAAGAT GATAACTTAA GGAAGGTGAA 
    GAATTTTGTG GATGAAAACC GTGCTAATGG GGCTGGATCT TACGATCTTG 
    CTATGCTTTA TCCAAGAAAA GTTTTCACTG AACAAGACAT GGAAGCCACG 
    TTGCATGAAC TGGGTATTGA AACCCGGCAG GCTCTCACTA TTGTTCCACA 
    TCATAAAACC ATTCGAGCAG CAAAGCGCCA ATCATCATCA TCACCCCATG 
    AAGGGGATAA CAATATGGAT GCAGACAGCT CAGGTGGTTC GGGATATTTC 
    GGTTATCTGA GAACTGCCCT ATCGTTTGTG AATCCACTGT CCTACTTGAG 
    AGCAAATGCT GCTCCATCAA ACCCTGATCA GTTGGCAAAT CAGGGGTCGC 
    CACAGTACAG ACCGAGCACT GGACCCTGGA ATCGTCCTGG AGGGGACACT 
    GCTTCGG

    Gene models with high sequence identity

    1. AT2G43210.2 [+] show detail - Ubiquitin-like superfamily protein
      E-value: 9e-60; Score: 228.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan UBX 16.59
    Gene3D no description 1e-10
    HMMPfam UBX 2.8e-13
    superfamily Ubiquitin-like 5.6e-16
    HMMPanther UBX DOMAIN-CONTAINING 2 3.4e-47
    HMMPanther UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAININ 3.4e-47

    See the detailed result >

    AT2G43210.2

    Model type
    Protein coding
    Short Description
    Ubiquitin-like superfamily protein
    Computational Description
    Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR