K28426

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28426

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28426

Determination of introduced cDNA(s)

  • J023106G11 - Rice Full-length cDNAs - Original: J023106G11

    full reading [+] show sequence

    Nucleotide sequence: J023106G11 - full reading
    GCTCCCCCCC ATCACCACCA CTCCTCCGCC GCGTCGCCGT CGCCGTCACC 
    GACAAGCCTC GCCTCTCCTC GCCGGTTCGC CGTCGCGGCC GCCTCCTTTG
    TCCGCTCCAG CGCCCTCCTC GGCCCGGATC GGCCCTTCCC CAGATGGAGA
    GGGCACTTGA TTCCTTGACG TACAAAGGCT CCATTCCAGA CGCTATCCTT
    CAGTCAAGAA GGGATAACAA ACTCTTTGTA GTGTACATAT CAGGTGAAGA
    TGAGACTTCG AGTAGTTTGG AACAGTCGAC ACTTGTTAAT GAAAGTGTGG
    CTGAAGTGAT AGGCAACTGT TGCGTATTCC TGCATCTAAA ACAAGGCAAC
    GTCGATGCAT CCCAATTTTC AGCTATATAT CCACAGAAGG CTATCCCAAG
    TATATCTGTC ATTGGACAGA ATGGTGTTAT GCTATGGTGT CATGAGGGAT
    ACATCAGCTC GAAAGATCTG AAAGAAAATA TTGAGAAAGC TTGGGCTACC
    CTTCACCTGC AGGGTACAGC AGCAGCCTTT CTGACTGCAT CACTTGCTTC
    AAGAATGACT GAACCTGTGA ATACCACCCC GACCACTCTA CCTACTCAAG
    GAGGCTCATC TGCTGCAGAG AATCCCTCTA CTTCATCAAA TCAATCTACA
    GGAACTTCTG GAGCCAGTGG GTTTGCTAAT CCTACTGATT CGGTGGCACA
    GCCACCTAGA AGCACAAGCC GTGATGAAAC TCCCAGCATA AGTGAAAAAG
    AATCCTCAAA TTTGGATTCA AGTCCAGGTA ATAGAACTGT TCAAGAAAGG
    CCAGATTCAG ATAGTGCGCA AGTTAAAGGT TCTTTGCCTG ATCATCCAAG
    GAGCTCAAAT ATAGAAGGTT GTGCAAATCC AGTTCAATCA GGCAATACAG
    CATCACTAAA ACAGAAAAAT AAAGTGGATG ATGGTTTCAC CAAAGTTTCC
    TCAGAGTCAG TTCCTACCAG AGTAGCTAGT AGAGGTAAAT CGTCAAAGGT
    AGCTGTGGAT CAAGACAAGG CAACAACCAC TAGCACCCCT ATTGAACCTG
    CCCCTGTGAG GTCAAATGAT ATTCAGCTGG TCGTTCGCAT TCCTGATGGA
    CCTAGTCTGC AGATTAAACT GACAAAAGAT GATAACTTAA GGAAGGTGAA
    GAATTTTGTG GATGAAAACC GTGCTAATGG GGCTGGATCT TACGATCTTG
    CTATGCTTTA TCCAAGAAAA GTTTTCACTG AACAAGACAT GGAAGCCACG
    TTGCATGAAC TGGGTATTGA AACCCGGCAG GCTCTCACTA TTGTTCCACA
    TCATAAAACC ATTCGAGCAG CAAAGCGCCA ATCATCATCA TCACCCCATG
    AAGGGGATAA CAATATGGAT GCAGACAGCT CAGGTGGTTC GGGATATTTC
    GGTTATCTGA GAACTGCCCT ATCGTTTGTG AATCCACTGT CCTACTTGAG
    AGCAAATGCT GCTCCATCAA ACCCTGATCA GTTGGCAAAT CAGGGGTCGC
    CACAGTACAG ACCGAGCACT GGACCCTGGA ATCGTCCTGG AGGGGACACT
    GCTTCGG

    Gene models with high sequence identity

    1. AT2G43210.2 [+] show detail - Ubiquitin-like superfamily protein
      E-value: 9e-60; Score: 228.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan UBX 16.59
    Gene3D no description 0.0000000001
    HMMPfam UBX 0.00000000000028
    superfamily Ubiquitin-like 5.6e-16
    HMMPanther UBX DOMAIN-CONTAINING 2 3.4e-47
    HMMPanther UBIQUITIN-ASSOCIATED UBA/UBX DOMAIN-CONTAININ 3.4e-47

    See the detailed result >

    AT2G43210.2

    Model type
    Protein coding
    Short Description
    Ubiquitin-like superfamily protein
    Computational Description
    Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR