K28427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28427

Determination of introduced cDNA(s)

J033073M23 - Rice Full-length cDNAs - Original: J033073M23

full reading [+] show sequence

GGTCTGCCTG CCTGCCTGAA CGAGGAATCG CTCATCGCTG CATCACTGCC 
GCAGACGCCG GCGTGGTCGG GATGGGGCGG CCACCGAGCA CGGGGGGCCC 
GGCGTTCCGG TTCACCCAGG CGGAGGTGGC CGAGATGGAG GCCCGCCTGC 
AGCAGCTCAA CAACGCCATC CCGCACCGCT CCGTCATCCA GGCCCTCGCC 
GACAAGTTCA CCTCCTCCCC CGCCCGCTCC GGCAAGGTCG CCGTCCAGCC 
CAAGCAGGTG TGGAACTGGT TCCAGAACCG GAGGTACTCG CACCGCTCCA 
GGAGCTCCAG GGGCCCCCCG ACGCTGATGC AGACCAAGAT GCTGCCCACG 
GGGTCCGACG AGCACAAGTC GCCTCCCTTC AGGGCTATGC CCTCTGCCTC 
TGCGCACTCC GGCTCGCCCT CAGGGAAGGG TTCTTTGGAG AGCGGCCAGG 
TTGAATTTGA AGCAAAGTCG GCTAGAGATG GCGCATGGTA TGATGTTGCT 
GCCTTCCTGT CTCATCGGTT GTTCGAATCT GGTGATCCAG AAGTACGAGT 
TCGCTTTTCT GGATTTGGAG CCGAGGAAGA TGAATGGATA AATGTCCGTA 
AATGTGTGCG GCAACGTTCT CTTCCGTGTG AATCAACTGA ATGTGTTGCT 
GTTCTTCCTG GAGACCTCAT ACTTTGCTTT CAGGAAGGCA AAGAGCAGGC 
TCTGTATTTC GATACTTGTG TCCTTGATGC TCAAAGGCGT AGACATGATG 
TACGAGGGTG TCGCTGTAGA TTTCTTGTTC GCTACGATCA TGATCACTCT 
GAGGAAATTG TTCCACTGAG GAAGGTATGT CGCCGACCAG AAACTGACTA 
CAGGTTTCAG ATTCTGCATG CTGCTAGAGC AGCAGGTATG GCTAAAGAGG 
CTGTGGTTGA TTTGGTGTCG CACAATGATA AGAGCTCAGC GGAGCAGAAA 
CCCCCAAAGC AGCACAAAAT GATGGATGTG AACACTGATG AGGTAACCAT 
GGTTTCTAAC CAAGACCAAG AAGAGCCAAC AGGCAAGCCT GCTGCTACCT 
TGCCAGCAGC ACCGGTCAAA ACCCTGAATG ATTCAGCTTC AGCTTCAGCT 
TCAGATGTCC AAATGGGCGA GGCACAGGCT GCTCCAAAAG TTGAATCTTC 
TGATGAAGTA GAAGACAAGA TGAAAGAGGG ATAGTTGGTT GCCTTTGCTG 
AGCATTATGT TTGGCTGGCG GCTGCAGTAA ACAGCATCTG GTTAAATGCA 
TTGGCATCTG ATCACCTGTT CTCCTGCTAG GCTGCTACAC ACATGTTGTG 
ACTTCCAACG CAGGAATGTA TGTCTTCAGT CTTCACAACA CATGTTGTGA 
CTTGTGAAGA TTTAGTAATT GCTTAGGAAC CCTCTCAAAA GGGTAAATAT 
GATTGTTAGG AACTTTAGCT CCAAACATAA ATTGATTGCA TAGGAACTTT 
AGCTCCGAAG AAAATGTAAT GTGGTTGCGG TGGGATTGAC TTGATTGCTG 
TCACACAAAT TCGGCCGAGG ATCCGTGTTG ACCACAAATA GGACTGGCCT 
GCCATGCCAC AACTAGGATC TGTGTTTAAT ATAGCGTGCC AAATAGGTGT 
GAATCGGTGC CTTTGAAGGT TATCATCAAT TGTTCTGAAG GTAAAATTTC 
TCAGG

Gene models with high sequence identity

AT3G18380.1 [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA binding
E-value: 4e-81; Score: 299.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Homeodomain-like	5.6e-11
ProfileScan	Homeobox	10.139
HMMPfam	Homeobox	1.2e-06
HMMSmart	Homeobox	0.0056
Coil	coiled-coil	0

See the detailed result >

AT3G18380.1

Model type: Protein coding
Short Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding
Computational Description: sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR