K28427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28427

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28427

Determination of introduced cDNA(s)

  • J033073M23 - Rice Full-length cDNAs - Original: J033073M23

    full reading [+] show sequence

    Nucleotide sequence: J033073M23 - full reading
    GGTCTGCCTG CCTGCCTGAA CGAGGAATCG CTCATCGCTG CATCACTGCC 
    GCAGACGCCG GCGTGGTCGG GATGGGGCGG CCACCGAGCA CGGGGGGCCC
    GGCGTTCCGG TTCACCCAGG CGGAGGTGGC CGAGATGGAG GCCCGCCTGC
    AGCAGCTCAA CAACGCCATC CCGCACCGCT CCGTCATCCA GGCCCTCGCC
    GACAAGTTCA CCTCCTCCCC CGCCCGCTCC GGCAAGGTCG CCGTCCAGCC
    CAAGCAGGTG TGGAACTGGT TCCAGAACCG GAGGTACTCG CACCGCTCCA
    GGAGCTCCAG GGGCCCCCCG ACGCTGATGC AGACCAAGAT GCTGCCCACG
    GGGTCCGACG AGCACAAGTC GCCTCCCTTC AGGGCTATGC CCTCTGCCTC
    TGCGCACTCC GGCTCGCCCT CAGGGAAGGG TTCTTTGGAG AGCGGCCAGG
    TTGAATTTGA AGCAAAGTCG GCTAGAGATG GCGCATGGTA TGATGTTGCT
    GCCTTCCTGT CTCATCGGTT GTTCGAATCT GGTGATCCAG AAGTACGAGT
    TCGCTTTTCT GGATTTGGAG CCGAGGAAGA TGAATGGATA AATGTCCGTA
    AATGTGTGCG GCAACGTTCT CTTCCGTGTG AATCAACTGA ATGTGTTGCT
    GTTCTTCCTG GAGACCTCAT ACTTTGCTTT CAGGAAGGCA AAGAGCAGGC
    TCTGTATTTC GATACTTGTG TCCTTGATGC TCAAAGGCGT AGACATGATG
    TACGAGGGTG TCGCTGTAGA TTTCTTGTTC GCTACGATCA TGATCACTCT
    GAGGAAATTG TTCCACTGAG GAAGGTATGT CGCCGACCAG AAACTGACTA
    CAGGTTTCAG ATTCTGCATG CTGCTAGAGC AGCAGGTATG GCTAAAGAGG
    CTGTGGTTGA TTTGGTGTCG CACAATGATA AGAGCTCAGC GGAGCAGAAA
    CCCCCAAAGC AGCACAAAAT GATGGATGTG AACACTGATG AGGTAACCAT
    GGTTTCTAAC CAAGACCAAG AAGAGCCAAC AGGCAAGCCT GCTGCTACCT
    TGCCAGCAGC ACCGGTCAAA ACCCTGAATG ATTCAGCTTC AGCTTCAGCT
    TCAGATGTCC AAATGGGCGA GGCACAGGCT GCTCCAAAAG TTGAATCTTC
    TGATGAAGTA GAAGACAAGA TGAAAGAGGG ATAGTTGGTT GCCTTTGCTG
    AGCATTATGT TTGGCTGGCG GCTGCAGTAA ACAGCATCTG GTTAAATGCA
    TTGGCATCTG ATCACCTGTT CTCCTGCTAG GCTGCTACAC ACATGTTGTG
    ACTTCCAACG CAGGAATGTA TGTCTTCAGT CTTCACAACA CATGTTGTGA
    CTTGTGAAGA TTTAGTAATT GCTTAGGAAC CCTCTCAAAA GGGTAAATAT
    GATTGTTAGG AACTTTAGCT CCAAACATAA ATTGATTGCA TAGGAACTTT
    AGCTCCGAAG AAAATGTAAT GTGGTTGCGG TGGGATTGAC TTGATTGCTG
    TCACACAAAT TCGGCCGAGG ATCCGTGTTG ACCACAAATA GGACTGGCCT
    GCCATGCCAC AACTAGGATC TGTGTTTAAT ATAGCGTGCC AAATAGGTGT
    GAATCGGTGC CTTTGAAGGT TATCATCAAT TGTTCTGAAG GTAAAATTTC
    TCAGG

    Gene models with high sequence identity

    1. AT3G18380.1 [+] show detail - sequence-specific DNA binding transcription factors;sequence-specific DNA binding
      E-value: 4e-81; Score: 299.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 5.6e-11
    ProfileScan Homeobox 10.139
    HMMPfam Homeobox 1.2e-06
    HMMSmart Homeobox 0.0056
    Coil coiled-coil 0

    See the detailed result >

    AT3G18380.1

    Model type
    Protein coding
    Short Description
    sequence-specific DNA binding transcription factors;sequence-specific DNA binding
    Computational Description
    sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 91 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR