K28434

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28434

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28434

Determination of introduced cDNA(s)

  • J033120H17 - Rice Full-length cDNAs - Original: J033120H17

    full reading [+] show sequence

    Nucleotide sequence: J033120H17 - full reading 
    GAGTCTCCCC CCCTCGCCTC GCATCCCACG CCTTCCCCCC CCCCATTCGT 
    CGCCTCCTGT CCCGGGGGCC GCGAGCAAAA CCCCCACCCC CAAATCGCAG 
    CCTCGCTCAG CTCGATCTCT CTCTCGTCTC GCCATGGCCC CCAGCGACGA 
    CCTCGTCTAC ATGGCCAAGC TCGCCGAGCA GGCCGAGCGA TACGACGAGA 
    TGGTGGAGGC AATGAATAGT GTGGCAAAGT TAGACGAGGG GCTGACAAAG 
    GAGGAGAGGA ACCTCCTCTC AGTTGGCTAC AAGAATTTGA TTGGTGCAAA 
    GCGTGCGGCA ATGCGTATCA TTGGATCCAT TGAGCTAAAG GAGGAGACAA 
    AGGGCAAGGA GAGTCATGTA AGGCAGACTG CTGAGTATCG TCGCAAGGTG 
    GAGGCTGAGA TGGATAAAAT CTGCTGTGAT GTCATAAACA TTATTGACAA 
    GTACCTTATC CCACATTCCT CTGGAGCTGA GAGCTCAGTC TTCTACTACA 
    AAATGAAGGG AGATTACTAC CGGTACCTTG CAGAGTTCAA GACTGGGACT 
    GAGAAGATTG AAGTGTCTGA ACTGTCACTC AATGCTTATG AGACTGCTTC 
    CAAAACTGCG CAGACAGATC TCACTCCAAC TGACCCTATC AGACTTGGTT 
    TAGCTCTGAA TATATCTGTC TTCTACTGTG AGATCATGAA CTCACCTGAC 
    AAAGCTTGCC AACTTGCTAA GAACGCCTTT GATGAAGCTG TTGCGGAGCT 
    TCCCTCCCTC AGTGAGGAGA ATTACAAAGA TAGTACACTG ATCATGCAAC 
    TTCTGAGGGA TAATCTAGCA CTGTGGAATT CTGATATGGC TGATGATGCA 
    GACGATATTA GGGAACGAAC AGATACAACT GGTGCTAAAG GTGACCCTGC 
    AGCGTGATGG AGGTGCTAAT AGCTGGTAGA GTCGAAGCAT AACAACAACA 
    ACAACAAGGG TGTGGTGGGG TGCGGAAGGA CTACCATTTA CTCACTGTTA 
    GTGTTAGGTT CTGTAGTGTA GGAGTTGAGC TGCTGAGTAA CCCTCGCTTG 
    TAGTCTGGGC CTGATTCTTC GACTTCTTGA GCAACATCGT GTACTAAGCA 
    CTCGCTGATC GCTCTTTTGC AAGCATTGTT TTTTTTTGGG TTACTCTTGA 
    TGATGATTAG GCAAAAGTTA TCTGGTTCAT CT

    Gene models with high sequence identity

    1. AT1G26480.1 [+] show detail - general regulatory factor 12
      E-value: 3e-87; Score: 318.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR 14-3-3 protein 6.8e-166
    HMMSmart 14-3-3 protein 1.9e-138
    Gene3D 14-3-3 protein 7.4e-97
    superfamily 14-3-3 protein 1.3e-94
    HMMPanther 14-3-3 protein 2.3e-146
    FPrintScan 14-3-3 protein 1.2e-77
    FPrintScan 14-3-3 protein 1.2e-77
    FPrintScan 14-3-3 protein 1.2e-77
    FPrintScan 14-3-3 protein 1.2e-77
    FPrintScan 14-3-3 protein 1.2e-77
    FPrintScan 14-3-3 protein 1.2e-77
    Coil coiled-coil 0
    HMMPfam 14-3-3 protein 1.3e-104

    See the detailed result >

    AT1G26480.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 12
    Curator Summary
    14-3-3 protein GF14iota (grf12)
    Computational Description
    general regulatory factor 12 (GRF12); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 9 (TAIR:AT2G42590.3); Has 2719 Blast hits to 2708 proteins in 388 species: Archae - 0; Bacteria - 8; Metazoa - 1259; Fungi - 334; Plants - 765; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR