K28437

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28437

Determination of introduced cDNA(s)

  • J023031F14 - Rice Full-length cDNAs - Original: J023031F14

    full reading [+] show sequence

    Nucleotide sequence: J023031F14 - full reading 
    GCTTGGCCGC TTCCCTAGGC TTGGCGTAAA AGAAAATCTC CCCGTCTCGT 
    CGTCTCCTCC GCTCCTTGCG CCATCTCGCG GCTGAACAGG GGAGGGGCGG 
    CGATCTCCAT CCGGCGAGCG GAGCAGGGGA GGGGAGGGGA TCTTGACAAT 
    GGTTGGACCT GGGCATAGGA ACAGTCACGG GAAGCGTCAC TCTGATTATG 
    CTGAAAATGG AGGTGGCAAG AGAAGGAATC CTGGTGATGA TACATATGCT 
    CCTGGTCCAG ATGATACTGT CTACCGCTAT CTTTGCCCTT CTAGAAAAAT 
    AGGGAGCATC ATTGGGAGGG GTGGAGAAAT TGCTAAGCAG ATGAGGGCCG 
    ACACTCAAGC TAAGATAAGG ATTGGTGAGA GTGTATCTGG TTGTGATGAG 
    AGAGTTATCA CAATATTTAG CTCAAGCAGG GAAACTAATA CCCTAGTAGA 
    TGCTGAAGAT AAGGTTTGCC CTGCCCAAGA CGCTCTCTTT AGAGTTCATG 
    AAAAGCTATC CATAGATGAT GATATTGGGA ATGAAGAAAG TGATGAAGGT 
    TTAGCTCAAG TTACCGTTCG GTTGCTTGTG CCATCAGACC AGATTGGATG 
    CATTATTGGA AAAGGTGGGC ATATTATACA GGGAATCCGC AGTGACACTG 
    GTGCTCATAT ACGTGTTCTT AGCAATGAAA ATCTCCCTGC GTGTGCCATC 
    AGTGGTGATG AACTTCTTCA GATATCTGGG GACTCGACAG TTGTCAGAAA 
    AGCTCTTCTT CAAGTGTCAT CTCGTCTCCA TGACAACCCA TCTAGGTCAC 
    AGCATCTTCT TGCATCCAGC ATGACACAGC CTTATCCAGT GGGCTCCCAC 
    CTTGGTAGTT CCTCAACTGC ACCAGTTGTG GGGATTACGC CTTTAATTAG 
    TTCTTATGGA GGATACAAAG GTGATGTGGC TGGAGATTGG CCTTCTATAT 
    ATCAACCACG GAGGGAGGAG AGCTCTGCAA AGGAATTTAG CTTGCGCCTT 
    CTTTGTGCTG CATCAAATGT GGGAGGTGTA ATTGGAAAGG GTGGTGGAAT 
    TATCAAACAG ATTAGGCAGG AGTCTGGAGC CTTTATCAAA GTTGATAGTT 
    CAAATACTGA AGATGACTGC ATAATTACTG TTTCTGCAAA GGAGTTCTTT 
    GAAGATCCTG TCTCCCCAAC AATAAATGCT GCAGTTCATT TACAACCAAG 
    ATGCAGTGAG AAAACTGATC CGGAATCAGC GATCCCGTCT TACACAACAC 
    GCTTGTTGGT GTCGACATCA CGTATTGGGT GCTTGATTGG AAAAGGTGGT 
    TCAATCATTA CTGAGATAAG GAGAACATCA AGAGCAAACA TACGTATCCT 
    TTCTAAGGAT AATGTACCAA AAGTAGCAGC AGAAGACGAA GAGATGGTTC 
    AGATCAGTGG AGACCTTGAT GTTGTAAGAC ATGCTCTTCT GCAAATAACT 
    ACTAGGCTGA AAGCCAATTT CTTTGAAAGA GAAGGTGCTT TATCAGGTTT 
    CCCACCTGTA ATCCCTTACC ATCCTCTTCC AGTTGGTGTT TCTGAAGGGC 
    CAAAGTATCT AGGCAGAGAT ACTAAGCCTC TTGGGCATGA TTATCCATAT 
    TCAAGTGGAT ATCGTGGCTC AGATGATATT GGCCCTATTG ACAGCTATGC 
    AAGTTATGGC AGCTCCCAGG TCTCTGGAGG AGGTTATGGG GCTTATGGTG 
    GATATAGTGG TCGTTCTGGC AGCAGTGGGT TATCTGGCCC TAGTTCATTT 
    TCCTATGGAA AGCGACATGG TTATTAGGAC TTAGATTGAC AAATGCAACA 
    GCCAAGACAA AAGAATGCCA AGACCAATGA AGTATGGAGC CTGCTTATTG 
    GAGCCCCTTC CCAAACCAGA TGACCAAGAG TATGGCCCCA ACCTGGAAGC 
    TTTGCCTAAG AGGGACCTGC CTGGATGCCA TAGACCATCT TATTTCCCTA 
    GTATACAGCA TTTACTTATA TTTTCCTCTG GGACTATGTT GATTCCCCGT 
    CTTACATGTT CTAAACCTAT GTATTGAAAG TTCACAGTTG AGACTTCCTG 
    TATGTGTTCT CGTGCAACCT GCTTCATCTT AGTAGTTCGT GTGGAAGAAC 
    TTGGTTCCCT GTTTGCCAAC C

    Gene models with high sequence identity

    1. AT5G15270.2 [+] show detail - RNA-binding KH domain-containing protein
      E-value: 4e-133; Score: 472.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart K Homology 8.1e-07
    HMMSmart K Homology 6.8e-11
    HMMSmart K Homology 0.00048
    HMMSmart K Homology 4.2e-10
    ProfileScan K Homology, type 1 17.212
    ProfileScan K Homology, type 1 12.852
    ProfileScan K Homology, type 1 12.831
    ProfileScan K Homology, type 1 15.85
    Gene3D no description 3e-07
    Gene3D no description 2.2e-13
    Gene3D no description 3.7e-06
    Gene3D no description 6.2e-13
    superfamily Eukaryotic type KH-domain (KH-domain type I) 3.3e-15
    superfamily Eukaryotic type KH-domain (KH-domain type I) 2.5e-14
    superfamily Eukaryotic type KH-domain (KH-domain type I) 6e-13
    superfamily Eukaryotic type KH-domain (KH-domain type I) 7.8e-10
    HMMPanther RNA-BINDING PROTEIN RELATED 2.3e-153
    HMMPanther RNA-BINDING PROTEIN RELATED 2.3e-153
    HMMPfam K Homology, type 1, subgroup 1.7e-10
    HMMPfam K Homology, type 1, subgroup 4.2e-14
    HMMPfam K Homology, type 1, subgroup 4.1e-10
    HMMPfam K Homology, type 1, subgroup 1.8e-13

    See the detailed result >

    AT5G15270.2

    Model type
    Protein coding
    Short Description
    RNA-binding KH domain-containing protein
    Computational Description
    RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR