K28437

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28437

Determination of introduced cDNA(s)

  • J023031F14 - Rice Full-length cDNAs - Original: J023031F14

    full reading [+] show sequence

    Nucleotide sequence: J023031F14 - full reading
    GCTTGGCCGC TTCCCTAGGC TTGGCGTAAA AGAAAATCTC CCCGTCTCGT 
    CGTCTCCTCC GCTCCTTGCG CCATCTCGCG GCTGAACAGG GGAGGGGCGG
    CGATCTCCAT CCGGCGAGCG GAGCAGGGGA GGGGAGGGGA TCTTGACAAT
    GGTTGGACCT GGGCATAGGA ACAGTCACGG GAAGCGTCAC TCTGATTATG
    CTGAAAATGG AGGTGGCAAG AGAAGGAATC CTGGTGATGA TACATATGCT
    CCTGGTCCAG ATGATACTGT CTACCGCTAT CTTTGCCCTT CTAGAAAAAT
    AGGGAGCATC ATTGGGAGGG GTGGAGAAAT TGCTAAGCAG ATGAGGGCCG
    ACACTCAAGC TAAGATAAGG ATTGGTGAGA GTGTATCTGG TTGTGATGAG
    AGAGTTATCA CAATATTTAG CTCAAGCAGG GAAACTAATA CCCTAGTAGA
    TGCTGAAGAT AAGGTTTGCC CTGCCCAAGA CGCTCTCTTT AGAGTTCATG
    AAAAGCTATC CATAGATGAT GATATTGGGA ATGAAGAAAG TGATGAAGGT
    TTAGCTCAAG TTACCGTTCG GTTGCTTGTG CCATCAGACC AGATTGGATG
    CATTATTGGA AAAGGTGGGC ATATTATACA GGGAATCCGC AGTGACACTG
    GTGCTCATAT ACGTGTTCTT AGCAATGAAA ATCTCCCTGC GTGTGCCATC
    AGTGGTGATG AACTTCTTCA GATATCTGGG GACTCGACAG TTGTCAGAAA
    AGCTCTTCTT CAAGTGTCAT CTCGTCTCCA TGACAACCCA TCTAGGTCAC
    AGCATCTTCT TGCATCCAGC ATGACACAGC CTTATCCAGT GGGCTCCCAC
    CTTGGTAGTT CCTCAACTGC ACCAGTTGTG GGGATTACGC CTTTAATTAG
    TTCTTATGGA GGATACAAAG GTGATGTGGC TGGAGATTGG CCTTCTATAT
    ATCAACCACG GAGGGAGGAG AGCTCTGCAA AGGAATTTAG CTTGCGCCTT
    CTTTGTGCTG CATCAAATGT GGGAGGTGTA ATTGGAAAGG GTGGTGGAAT
    TATCAAACAG ATTAGGCAGG AGTCTGGAGC CTTTATCAAA GTTGATAGTT
    CAAATACTGA AGATGACTGC ATAATTACTG TTTCTGCAAA GGAGTTCTTT
    GAAGATCCTG TCTCCCCAAC AATAAATGCT GCAGTTCATT TACAACCAAG
    ATGCAGTGAG AAAACTGATC CGGAATCAGC GATCCCGTCT TACACAACAC
    GCTTGTTGGT GTCGACATCA CGTATTGGGT GCTTGATTGG AAAAGGTGGT
    TCAATCATTA CTGAGATAAG GAGAACATCA AGAGCAAACA TACGTATCCT
    TTCTAAGGAT AATGTACCAA AAGTAGCAGC AGAAGACGAA GAGATGGTTC
    AGATCAGTGG AGACCTTGAT GTTGTAAGAC ATGCTCTTCT GCAAATAACT
    ACTAGGCTGA AAGCCAATTT CTTTGAAAGA GAAGGTGCTT TATCAGGTTT
    CCCACCTGTA ATCCCTTACC ATCCTCTTCC AGTTGGTGTT TCTGAAGGGC
    CAAAGTATCT AGGCAGAGAT ACTAAGCCTC TTGGGCATGA TTATCCATAT
    TCAAGTGGAT ATCGTGGCTC AGATGATATT GGCCCTATTG ACAGCTATGC
    AAGTTATGGC AGCTCCCAGG TCTCTGGAGG AGGTTATGGG GCTTATGGTG
    GATATAGTGG TCGTTCTGGC AGCAGTGGGT TATCTGGCCC TAGTTCATTT
    TCCTATGGAA AGCGACATGG TTATTAGGAC TTAGATTGAC AAATGCAACA
    GCCAAGACAA AAGAATGCCA AGACCAATGA AGTATGGAGC CTGCTTATTG
    GAGCCCCTTC CCAAACCAGA TGACCAAGAG TATGGCCCCA ACCTGGAAGC
    TTTGCCTAAG AGGGACCTGC CTGGATGCCA TAGACCATCT TATTTCCCTA
    GTATACAGCA TTTACTTATA TTTTCCTCTG GGACTATGTT GATTCCCCGT
    CTTACATGTT CTAAACCTAT GTATTGAAAG TTCACAGTTG AGACTTCCTG
    TATGTGTTCT CGTGCAACCT GCTTCATCTT AGTAGTTCGT GTGGAAGAAC
    TTGGTTCCCT GTTTGCCAAC C

    Gene models with high sequence identity

    1. AT5G15270.2 [+] show detail - RNA-binding KH domain-containing protein
      E-value: 4e-133; Score: 472.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart K Homology 0.00000081
    HMMSmart K Homology 0.000000000068
    HMMSmart K Homology 0.00048
    HMMSmart K Homology 0.00000000042
    ProfileScan K Homology, type 1 17.212
    ProfileScan K Homology, type 1 12.852
    ProfileScan K Homology, type 1 12.831
    ProfileScan K Homology, type 1 15.85
    Gene3D no description 0.0000003
    Gene3D no description 0.00000000000022
    Gene3D no description 0.0000037
    Gene3D no description 0.00000000000062
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000000000033
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.000000000000025
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000000006
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.00000000078
    HMMPanther RNA-BINDING PROTEIN RELATED 2.3e-153
    HMMPanther RNA-BINDING PROTEIN RELATED 2.3e-153
    HMMPfam K Homology, type 1, subgroup 0.00000000017
    HMMPfam K Homology, type 1, subgroup 0.000000000000042
    HMMPfam K Homology, type 1, subgroup 0.00000000041
    HMMPfam K Homology, type 1, subgroup 0.00000000000018

    See the detailed result >

    AT5G15270.2

    Model type
    Protein coding
    Short Description
    RNA-binding KH domain-containing protein
    Computational Description
    RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR