K28440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28440

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Original: K28440

Determination of introduced cDNA(s)

  • J033136D21 - Rice Full-length cDNAs - Original: J033136D21

    full reading [+] show sequence

    Nucleotide sequence: J033136D21 - full reading 
    TCCCCCCCCC AAATCTGCAC CACCGCCGCG CCGCAATGGC GTCTCCTCCC 
    CACCTCCCCC TCCTCCTCCT CCTCCTCGTC GTCGTCTGCA ATGCCGCCGG 
    CGGCGACGGT GCCAGGGTGA ACCCGTTCAC GGCGAAGGCG GCGTTCATCC 
    GGTACTGGAA CCGGCGGGTG CCCAACAACC GCCCCCACCC GGCCTTCTTC 
    GTCGCCAAGC TCTCCCCGCT CCAGGCCGCC GACGCCGCCT CCTTCGCAGC 
    CGCGCTCCCG CGGCTTCTCC CGCCGCTCTG CGCCAGGGCC GCCCTGCTCT 
    GCCCCTCCGC CTCCGACACC GAGACGGCCG CCTCCCTCGC CGTCGGCGGC 
    GGCGGAGGTG GTGGGCCGTT TAAGGGGTAT AGTAATGCCA ACTTCACCAA 
    CTACGGCAGC GGCGGCGTGG GCGGCGCCGA CGGGTTCAGC GCCTACTCCC 
    CCGACCTCAA CGTCGTCGGC GACTCGTTCC GGCGGTACGG CCGCGACTCG 
    ACGCGGAGGG TGGACACGTT CGCCAGCTAC GAGGCGGAGG GGAACGTGGT 
    CACCGCCAAC TTCACCTCCT ACGCCGGCGC CGCCACGGGC GGGTCGGGCT 
    CATTCTCCGC CTACGCCGCC GACACCAACG TGCCGGACTC CACCTTCACC 
    AACTACGACG CCGAGGCCAA CGGCCGCCGC CGCGAGTTCA CCTCCTACTC 
    CCAGGAGGCC AACCACGGGT CGAACACCTT CGCCGGCTAC GGCAAGAACG 
    GCAACGGCCT CAGGGAGACC TTCACCACCT ACGGCAACGA CTCCAACGTC 
    ATCGCCTCCG GCTTCACCAA CTACGGCGAG TCCGGCAACG GCGCCACCGA 
    CACCTTCACC GCCTACGGCA AAGAGGGGAA CGTCCCCGAC AACACCTTCC 
    GGAGCTACGG CGCCGGCGGC AATGCCGGCG TCGACACATT CAAGGGCTAC 
    CGCTCCGAGT CCAATGTCGG CGACGACAGC TTCGCCTCCT ACGCCAAGGG 
    CGCCAACGGC AACGCCGCCG AGTTCCAGAA CTATGGCGGC TCATTCAACC 
    CCGGCACCGT CACCTTCAAA GGCTACGGCG AAGGGAGCAA CCCCAATCAC 
    CACATTGGCT TCAAGGAGTA TGCCGGGAGC AACAATTCAT TCAAGGGGTA 
    TGCCAAGTCC GGCGTCGATT TCAAGGAGTA CCACAACACG TCGTCGGCAG 
    ACGCGGCGAC GACGATGTCA TTGGAGGCGG TGTCGTCCGG CCACCAGCAT 
    TTGAAGTGGT CGCCGGAGCC AGGGAAGTTC TTTAGGGAGA CGGAGCTGGT 
    GTCCGGGAAC ACAATGCCGA TGCCTGACAT CAAGGACAAG ATGCCACCCA 
    GGGCATTCCT ACCAAGGGAC ATTGCCAAGA AGATACCATT CAAGCCGAAT 
    GCGGTGTCGG AGGTGTTCGG GGTGCCGTTG GACACTGCAA TGGGGAAGGC 
    GGTCACGTCC ACGGTGGCTG AGTGCGAGCG AGCGCCGAGC CGGGGTGAGA 
    CCAAGCGGTG TGCAACCTCA GCTGAGGACA TTGTGGACTT TGCCGTGGAG 
    ATGCTAGGCA ATGACATTGT TGTGCGCAGC ACGGCCTCCA CGGCTGGAAG 
    TGGCGGGCAA ATCAGGCTCG GCAATGTTAC CGGTGTTGAT GGTGGCAAGG 
    TGACCCGGTC CGTATCGTGT CACCAGAGCT TGTTCCCGTA TCTGGTGTAC 
    TACTGCCACT CGGTGCCGAA GGTGCGGGTG TATGAGGCCG ATATCATGGC 
    TGCCGACTCC GATCAGAAGA TCAATCATGG GGTGGCAATT TGTCACCTCG 
    ATACTTCTGA TTGGAGCCCA ACCCATGGAG CGTTCATCGC GCTTGGTGGA 
    AAACCCGGTG AGGTTGAGGT TTGTCACTGG ATCTTCGAGG GTGACATGAC 
    ATGGACAGTC GCGGATTAAT GCGATCAAAA CCATCTTATT AACCGGTCAA 
    TCTTCCTCTT GCCAAACTAA GAAGAGTTCT TTTTCCTATG CTTGATTTTT 
    CTTCTTTTGC AACCATAAGG GTTTAAGAAT TGTGCAATGT GTGTAGGAGA 
    AAAGTGCTGG TTCATCACCA AATGTAAACA GTATATCCCG GAAATTTGGG 
    GGAGTTGTGC GTAATTTGAT TGTCTTGATC

    Gene models with high sequence identity

    1. AT1G70370.2 [+] show detail - polygalacturonase 2
      E-value: 2e-151; Score: 533.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BURP 2.5e-72
    ProfileScan BURP 69.351
    Coil coiled-coil 0

    See the detailed result >

    AT1G70370.2

    Model type
    Protein coding
    Short Description
    polygalacturonase 2
    Computational Description
    polygalacturonase 2 (PG2); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein (TAIR:AT1G23760.1).
    Link
    InterPro Scan - TAIR