K28443

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28443

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28443

Determination of introduced cDNA(s)

  • J013097L24 - Rice Full-length cDNAs - Original: J013097L24

    full reading [+] show sequence

    Nucleotide sequence: J013097L24 - full reading 
    GGTTCTCTCT TCTCTAGTAG ACTCGTTCTC TCTCCCCCTT TCCTTCCCCT 
    CGGCCTCGAC TCCCCCGTCT CTCCGCGCCA GCTCGTTCCC CGCCGGCGCC 
    GCCCAGCGCC GATCTCCGTC CCGGGGGCAG CAGCGGGCGC CGCCGACCTG 
    CTGCTTCCGC CCGCATCCTC GTCGCCGGTT TGGCCCGGCT CTGAAGTAAG 
    CAGGATTCTG AATCTGAGAA CGAGGAGTTG GATTGGGGGA CTATGGCTCA 
    GATCCCCAAT CTCGACAATG CTCCTCTCAA TCTCGCGGCC CTCAGGGAGC 
    AGTCGCAGAA GGACCTGCTA AACATCCTCA AGAGTATTAG GGGGAAGAAG 
    TGTGTAGTTA TTGATCCCAA GCTCGCGGGT ACCCTGTCTC TGATTCTGCA 
    GACCTCACTG CTAAAGGAAT ATGGTGCAGA GTTGCGGCTT CTCTCTGCTG 
    AACCCCTCCA AACTGAGTGC GCTAAGATCC TATATCTCGT ACGCTCTGAG 
    CTGAAGTTCA TGAAATTAAT TGCAAGCCAG ATTAAGAACG ATGAGCCTAA 
    AGGGCTTCAG AGGGAATTCT TTCTTTACTT TGTGCCACGG CGCACAGTTG 
    CCTGCGAAAA GATTCTGGAG GAGGAAAAAG TTCATCAGAA ATTGACACTC 
    GGAGAGTACC CCTTGTATCT AGTTCCATTG GATGAAGATG TGATTTGTTT 
    TGAACTTGAT CATTCTCTGC AGGAATGCCT TATTGAAGGG GATACTAGTT 
    CTGTTTGGCA TGTTGCAAAA GCTATCCATA AGTTAGAGTT TGCCTTTGGA 
    GTAATTCCCA ATGTTCGGGC CAAGGGTGTT GCATCCACCA AAGCCGCAGA 
    GTTGCTGAAT AGTATGCAAC AGGAAGATCC TGTCAACATG GATGATATGG 
    GGACTCCGGA GATAAACACT GTTATTTTGT TAGACAGAGA GGTGGATTTA 
    GTGACACCGA TGTGCTCTCA GTTGACATAT GAAGGTTTAT TAGATGAGAT 
    GTTGCAAATA AACAATGGAT CTGTGGAGGT TGATGCCACT ATTATGGGAG 
    CCCAACAAGA TGGTAAAAAA GTTAAAGTTC CACTGAATTC AAGTGATAAG 
    TTGTACAAGG AAATTCGAGA TCTCAATTTT GAAGTTGTAG TTCAGGTCTT 
    GCGCCAAAAG GCAACATCTA TTCAGCAAGA TTACGCCGAA GTAAAATCCA 
    CCAATACTCA ATCGGTTTCG GAGCTGAAGG ACTTTGTGAA GAGGTTACAT 
    TCACTGCCAG AGATAGCTAG GCATGTTCAT TTGGCACAAC ACTTGCAATC 
    ATTTACTGGA AAACCTTCCT TTCATGCCCG ATTAGACATT GAACAAACAA 
    TATTGGAGGT GCAAAACTTT GAAATATGTT TTGAATACAT TGAAGAGATG 
    ATACATAAGC AGGAGCCTAT TGAAAATGTT CTTCGCCTTC TAGTGTTACT 
    TTCACTTACA AATGCTGGGT TGCCAAAGAA GAATTTTGAC TACTTGAGGC 
    GGGAAATACT GCACAGTTAT GGCTTTGAGC ACATGCCCTT GTTATACAAT 
    CTGGAAAAGG CTGGCCTATT TAAGCGCCAG GAATCAAGAA GTAACTGGAT 
    TGGTATTACA AGGGCTCTAC AGCTTATAGT TGATGTAAAT GATACTGCAA 
    ACCCTAGTGA TATATCATAC ATATTTTCTG GATACGCCCC TCTCAGTATT 
    CGCCTTGTTC AGCATGCTGT GAGATCTGGA TGGCGATCTA TTGAAGAACT 
    GTTGAAACTA TTGCCAGGTC CTCATCTGGA TTTGAAAAGA GGTAGTTCGG 
    CCATTAATTC TTCATTGGAT GTACACCAAG GTTTGGGGCT TCAACAGAGT 
    ATTGACAGGG TTGGACATCG TTCTCTGGTT TTGGTTGTCT TTATTGGTGG 
    GGTTACTTTT GCAGAGATTG CTGCTCTTCG ATTCCTTAGT TCTCAGGAAG 
    GGATGGGCTA TGACTTCCTT GTTGCGACCA CAAAGGTTGT CAATGGGAAC 
    ACAATACTCA GGCCAATTAT AACCAATAGC AAAGAGGTGA TGATATAGAG 
    TAAATAATCT TTTGCTGCAC ATCCTTTTCT TTTCTGATTG TACTCTCACA 
    CACCCGAGCT CCACTTGGTT CTCATAGTTG TTACGGCTCC CTTGTATGTT 
    CTCAAACTGA GTGTATATAT TTTAACATCT GTAGATCTTT CTAGATTAAA 
    ATTCCGCATT CTAGTTTGGC ATTTCAGTTC TCTATTGCCC GTTTTCATTT 
    TCCTTTTCTA CCTCTTGTTG AATGTGCAAA CTTGAACGAC ACCAGTTATT 
    TCTCTTTCAA ATCCACTGTA TTTTGCATC

    Gene models with high sequence identity

    1. AT3G54860.1 [+] show detail - Sec1/munc18-like (SM) proteins superfamily
      E-value: 0; Score: 738.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sec1-like protein 8.8e-102
    HMMPanther VACUOLAR PROTEIN SORTING (VPS33) 4.7e-192
    HMMPanther Sec1-like protein 4.7e-192
    Gene3D no description 0.00000000053
    superfamily Sec1-like protein 8.6e-121

    See the detailed result >

    AT3G54860.1

    Model type
    Protein coding
    Short Description
    Sec1/munc18-like (SM) proteins superfamily
    Curator Summary
    Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.
    Computational Description
    ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1699 Blast hits to 1677 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 761; Fungi - 432; Plants - 184; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR