K28502

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28502

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28502

Determination of introduced cDNA(s)

  • J013116P20 - Rice Full-length cDNAs - Original: J013116P20

    full reading [+] show sequence

    Nucleotide sequence: J013116P20 - full reading
    GGTCGTCAGT TGAGCCTCAG CTCGCGCACT CACGAGCCGC GGCTTCACTC 
    ACCACTCCCC AGTCGCCACG CCTCGGCCCG ACGGGATGGG AAGGGGAGCC
    CCATCCTCCC ATCCGCCGCC ATGGCGCCGC CTCCTCCGCT ACGCCCTCCT
    CTGCGCCCTC CTCCCCCCCT GGGGCACTTC CGAGGCTAAT GAACAACTTG
    CTGAGTTTCC ACCAAGAGGC TGGAATTCCT ATGATTCCTT TTCATGGATA
    GTTGATGAAA ATACATACAT GCAAAATGCG GAGATCTTGG CAGAAAAATT
    GCTCCCACAT GGATATGAGT TTGCAGTTAT TGATTACCTC TGGTACCGAA
    AGTATGTTCA TGGGGCATAC ACAGATTCAT ATGGATTTGA TAACATTGAT
    GAGTGGGGTC GGCCATTTCC TGATCTTCAA AGATTTCCAT CATCCAGAAT
    TGATAAAGGG TTCAGTCAAC TTGCGAACAA GGTGCATGGA ATGGGCTTGA
    AATTCGGAAT CCATTTAATG AAAGGGATAA GTTTACAGGC TGTGAATGGA
    AACACACCCA TATTGGACAT TAAAACGGGA AAACCCTACG TAGAGGATGG
    CCGGCAATGG ACAGCTCGTG ATATAGGTCT TACACATAGA ACATGTGCAT
    GGATGCCACA TGGATTTATG AGTGTAAATA CTGATATTGG AGCTGGAAAG
    GCCTTCCTAA GATCTCTTTA TCAACAGTAC GCTGATTGGG GTGTTGATTT
    TGTGAAGGTT GATTGTATCT TCGGTACGGA TTACAGCCCA AAAGAAATCA
    TAACTATTTC AGAGCTCTTG GCAGAGCTTG ACCGCCCCAT CATCCTGTCC
    ATCTCACCAG GAACCGAAGT GACTCCAGCA TTAGCCAAAA ACATCAGTCA
    ACATGTTAAC ATGTACAGGA TAACAGGGGA TGATTGGGAC AACTGGAAGG
    ATGTTAGTTC ACATTTTGAC GTGTCTAGTT CCTTTGCTGC TGCAAATAAA
    ATTGGGGCCA TAGGATTACG AGGAAGATCT TGGCCAGATT TAGACATGCT
    CCCATTTGGC TGGCTTACAA ATGCAGGTGT CAATCAGGGT CCACATAGGC
    AATGTGAACT TACATCTGAT GAACAGAGAA CACAGATAGC ACTTTGGTCA
    ATGGCTAAGT CTCCTCTAAT GTATGGAGGA GATTTGAGGC ATCTCGACAA
    TGACACGTTA AGCATAATAA CAAATCCTAC ATTACTGAAA ATAAATCACT
    ACAGCATAAA TAATATGGAG TTCCATCATG TGCACAGTGA AAGGACTTCC
    AAAGAAGACA AGCATTCTAG TCGTTTCATA TCCGAAGATC TTGTACACGT
    ACCAAAGATT GATGGTGTAT CTCTTGGTCT CACTGCCTGC AGTGATGACA
    AAGCAAATGG ATGGTATATG TTTTCACAAC ATGGTAAATC AGATCATATA
    TGCAGGAACT ATGGGATGCA GGATGACAAA AATATCTCAT TTTGCCTGGG
    CAAAACAATT CCTCTCCTGA CATCGGATGA TATAATCGTA CATAATGAAG
    AATACCAAAC AAAGTTTCAC CTGGCAAATA TGGACAGTGA CGATGCTTGT
    CTGGATGCAT CTGGCAGTCA ACGGAGGACA TCCTCAGATA GCAAGTTTCC
    CATGTTTTCA AGGTGCAGGT GGCATGCTAT GCAGATGTGG GAGCTGAATG
    AGAAAGGAAA CCTCATTAGC AGTTACTCAA GATTATGTGC CACGGTGGAA
    TCCAACAATA AAGGAGTTGT AACTACAGGA GCAGTAGCAC GTGCATGGAT
    AGCAACTGGG AGTAAAGGAG AAATATACCT GGCGTTCTTC AACCTTGACT
    CCATGAGCAG GAAGATAACC GCGAGAATAT CAGACCTGGA AAAGGTTCTC
    GGGAGTACAT TCATAAGAAA AGACACGTGC AGCTGCACTG AAGTTTGGAG
    CGGGAGGAAT TTCGGTCGTG TGGAGGAAGA GATTTCAGCG GTAGTTAAAT
    CACATGGTTC CATGGTGTTT GAAATTACAT GTTGAGGTAT CCCATAATTC
    TCCTATTGCG CTTACTGAAG CATGACAGGA TGGAATAGAT AAGTAGGGAA
    AAGAGCCTTG AGCATGTATC AGGTAAAGCT ACCAAAATGA ACATCCTTT

    Gene models with high sequence identity

    1. AT3G26380.1 [+] show detail - Melibiase family protein
      E-value: 0; Score: 647.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Aldolase-type TIM barrel 2.1e-69
    HMMPanther ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMI 1.8e-68
    superfamily Glycoside hydrolase, catalytic core 1.1e-59
    superfamily Glycosyl hydrolase domain 0.0000000038
    HMMPfam Ricin B lectin 0.000079
    FPrintScan Glycoside hydrolase, family 27 0.000000072
    FPrintScan Glycoside hydrolase, family 27 0.000000072
    FPrintScan Glycoside hydrolase, family 27 0.000000072

    See the detailed result >

    AT3G26380.1

    Model type
    Protein coding
    Short Description
    Melibiase family protein
    Computational Description
    Melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Melibiase family protein (TAIR:AT3G56310.1); Has 1323 Blast hits to 1316 proteins in 313 species: Archae - 2; Bacteria - 513; Metazoa - 306; Fungi - 224; Plants - 205; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR