K28502

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28502

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28502

Determination of introduced cDNA(s)

  • J013116P20 - Rice Full-length cDNAs - Original: J013116P20

    full reading [+] show sequence

    Nucleotide sequence: J013116P20 - full reading 
    GGTCGTCAGT TGAGCCTCAG CTCGCGCACT CACGAGCCGC GGCTTCACTC 
    ACCACTCCCC AGTCGCCACG CCTCGGCCCG ACGGGATGGG AAGGGGAGCC 
    CCATCCTCCC ATCCGCCGCC ATGGCGCCGC CTCCTCCGCT ACGCCCTCCT 
    CTGCGCCCTC CTCCCCCCCT GGGGCACTTC CGAGGCTAAT GAACAACTTG 
    CTGAGTTTCC ACCAAGAGGC TGGAATTCCT ATGATTCCTT TTCATGGATA 
    GTTGATGAAA ATACATACAT GCAAAATGCG GAGATCTTGG CAGAAAAATT 
    GCTCCCACAT GGATATGAGT TTGCAGTTAT TGATTACCTC TGGTACCGAA 
    AGTATGTTCA TGGGGCATAC ACAGATTCAT ATGGATTTGA TAACATTGAT 
    GAGTGGGGTC GGCCATTTCC TGATCTTCAA AGATTTCCAT CATCCAGAAT 
    TGATAAAGGG TTCAGTCAAC TTGCGAACAA GGTGCATGGA ATGGGCTTGA 
    AATTCGGAAT CCATTTAATG AAAGGGATAA GTTTACAGGC TGTGAATGGA 
    AACACACCCA TATTGGACAT TAAAACGGGA AAACCCTACG TAGAGGATGG 
    CCGGCAATGG ACAGCTCGTG ATATAGGTCT TACACATAGA ACATGTGCAT 
    GGATGCCACA TGGATTTATG AGTGTAAATA CTGATATTGG AGCTGGAAAG 
    GCCTTCCTAA GATCTCTTTA TCAACAGTAC GCTGATTGGG GTGTTGATTT 
    TGTGAAGGTT GATTGTATCT TCGGTACGGA TTACAGCCCA AAAGAAATCA 
    TAACTATTTC AGAGCTCTTG GCAGAGCTTG ACCGCCCCAT CATCCTGTCC 
    ATCTCACCAG GAACCGAAGT GACTCCAGCA TTAGCCAAAA ACATCAGTCA 
    ACATGTTAAC ATGTACAGGA TAACAGGGGA TGATTGGGAC AACTGGAAGG 
    ATGTTAGTTC ACATTTTGAC GTGTCTAGTT CCTTTGCTGC TGCAAATAAA 
    ATTGGGGCCA TAGGATTACG AGGAAGATCT TGGCCAGATT TAGACATGCT 
    CCCATTTGGC TGGCTTACAA ATGCAGGTGT CAATCAGGGT CCACATAGGC 
    AATGTGAACT TACATCTGAT GAACAGAGAA CACAGATAGC ACTTTGGTCA 
    ATGGCTAAGT CTCCTCTAAT GTATGGAGGA GATTTGAGGC ATCTCGACAA 
    TGACACGTTA AGCATAATAA CAAATCCTAC ATTACTGAAA ATAAATCACT 
    ACAGCATAAA TAATATGGAG TTCCATCATG TGCACAGTGA AAGGACTTCC 
    AAAGAAGACA AGCATTCTAG TCGTTTCATA TCCGAAGATC TTGTACACGT 
    ACCAAAGATT GATGGTGTAT CTCTTGGTCT CACTGCCTGC AGTGATGACA 
    AAGCAAATGG ATGGTATATG TTTTCACAAC ATGGTAAATC AGATCATATA 
    TGCAGGAACT ATGGGATGCA GGATGACAAA AATATCTCAT TTTGCCTGGG 
    CAAAACAATT CCTCTCCTGA CATCGGATGA TATAATCGTA CATAATGAAG 
    AATACCAAAC AAAGTTTCAC CTGGCAAATA TGGACAGTGA CGATGCTTGT 
    CTGGATGCAT CTGGCAGTCA ACGGAGGACA TCCTCAGATA GCAAGTTTCC 
    CATGTTTTCA AGGTGCAGGT GGCATGCTAT GCAGATGTGG GAGCTGAATG 
    AGAAAGGAAA CCTCATTAGC AGTTACTCAA GATTATGTGC CACGGTGGAA 
    TCCAACAATA AAGGAGTTGT AACTACAGGA GCAGTAGCAC GTGCATGGAT 
    AGCAACTGGG AGTAAAGGAG AAATATACCT GGCGTTCTTC AACCTTGACT 
    CCATGAGCAG GAAGATAACC GCGAGAATAT CAGACCTGGA AAAGGTTCTC 
    GGGAGTACAT TCATAAGAAA AGACACGTGC AGCTGCACTG AAGTTTGGAG 
    CGGGAGGAAT TTCGGTCGTG TGGAGGAAGA GATTTCAGCG GTAGTTAAAT 
    CACATGGTTC CATGGTGTTT GAAATTACAT GTTGAGGTAT CCCATAATTC 
    TCCTATTGCG CTTACTGAAG CATGACAGGA TGGAATAGAT AAGTAGGGAA 
    AAGAGCCTTG AGCATGTATC AGGTAAAGCT ACCAAAATGA ACATCCTTT

    Gene models with high sequence identity

    1. AT3G26380.1 [+] show detail - Melibiase family protein
      E-value: 0; Score: 647.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Aldolase-type TIM barrel 2.1e-69
    HMMPanther ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMI 1.8e-68
    superfamily Glycoside hydrolase, catalytic core 1.1e-59
    superfamily Glycosyl hydrolase domain 3.8e-09
    HMMPfam Ricin B lectin 7.9e-05
    FPrintScan Glycoside hydrolase, family 27 7.2e-08
    FPrintScan Glycoside hydrolase, family 27 7.2e-08
    FPrintScan Glycoside hydrolase, family 27 7.2e-08

    See the detailed result >

    AT3G26380.1

    Model type
    Protein coding
    Short Description
    Melibiase family protein
    Computational Description
    Melibiase family protein; FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Melibiase family protein (TAIR:AT3G56310.1); Has 1323 Blast hits to 1316 proteins in 313 species: Archae - 2; Bacteria - 513; Metazoa - 306; Fungi - 224; Plants - 205; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR