K28510

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28510

Determination of introduced cDNA(s)

  • J033057D07 - Rice Full-length cDNAs - Original: J033057D07

    full reading [+] show sequence

    Nucleotide sequence: J033057D07 - full reading 
    GACTCTAGCA TTTCTCTCTC CGGGTGTGTC TCTCTCTTTC TTTCTCTCTG 
    GAAACAATGT CTCCTGTGCC GAGTCCGCAT CAATCACACC ATCTAGGCCA 
    TGGCTCAAGG AAAGAGAAGC GCATGAGGAA GGTGGATACC TTTGCGCCGC 
    ACAACGACGG CCACCAGTGG AGGAAGTACG GCGAGAAGAA GATAAACAAC 
    TGTAATTTCC CCAGATACTA CTACAGATGC ACCTATAAAG ATAACATGAA 
    TTGCCCAGCA ACGAAGCAGA TTCAGCAGAA AGATTATAGT GATCCACCAT 
    TGTACTCAGT CACCTACTAC AATGAGCATA CATGTAATAG TGCTTTTCTT 
    CCTCTTAGCC CCTCAGAGTT CCAGCTGCAG ACTGCATCTG GGAAGGCAGT 
    CTCCATCTGC TTTGAATCAT CTGGGGCTCA AGAACCAATG ACCAATGCCA 
    GCTCACCTTC TTCAAGCGCA GCACGGCGTA GCACACCTTC AGAGAACAAG 
    AATCAGCCTC TTCCACGGCA TTCGGAAGCC TATTCTTGGG GGGTTGGTGT 
    TGTAGAACAA AAGCCGTCCT GCACTGAGCT CCAATCTTGC AGCACCGAAT 
    GTCAGGATGC ATTTTCAGCT GGTACGATTC CTGAAGAGAC AGTAGATGCA 
    GGAAGATTTG GTTCTATCAG ATTCTTCCAT TTTTTGTAAA TGAATTAATG 
    GAAGACAGTT TATTTTATTT CAAAGAGCTA ATATGATACA CATGTTTTTT 
    CCTCTACACC CTCAAAGAGT ATGAGAGGTT TTCCTTGCAT GTCACCATGA 
    ATTTCTTAGT TGAATTGAAA TACCAGTGCT AATTTACATT CCAGAGTC

    Gene models with high sequence identity

    1. AT2G46400.1 [+] show detail - WRKY DNA-binding protein 46
      E-value: 0.000000000000001; Score: 80.50

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.4e-19
    ProfileScan DNA-binding WRKY 15.686
    HMMPfam DNA-binding WRKY 5.5e-18
    HMMSmart DNA-binding WRKY 7.8e-31

    See the detailed result >

    AT2G46400.1

    Model type
    Protein coding
    Short Description
    WRKY DNA-binding protein 46
    Curator Summary
    member of WRKY Transcription Factor; Group III
    Computational Description
    WRKY DNA-binding protein 46 (WRKY46); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G23810.1); Has 3385 Blast hits to 2951 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3370; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR