K28520

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) increased length (PATO:0000573) (Rosette leaf::Shape::long)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28520

Determination of introduced cDNA(s)

J023007D20 - Rice Full-length cDNAs - Original: J023007D20

full reading [+] show sequence

TGGTCCCCTG TCTCTCTACC CAAGTACTCA GTCGGCGCAA CGCAACACAG 
TCAGAGTGAT CGCCAGTGGG GAAGGCTACC AGCAGCAATC CAATCTAATC 
CACCTCCACT CCCCCGCCGC CGCCGCACCT GGAGTGCCCG GATCCGCCGC 
CGCCGCCTCC TCTGGGGTTG ATTGATGGCC ACGCCGTTCC ACAGCCCGCC 
CTGCCCAACA GCCGAGCTTC TCCTCCACCG TCTCTAGAAG CTTCACCCCC 
CCCCCCCCCA CGTCGCCGCT TCCCAAACCC TAGCGTAGCG CCTCGTCGAG 
GGTGAGAAGG AGGGTGGGCA TGGATAGGAT CGTCGGGGCT AAGTACAAGC 
TGGGCCGCAA GATCGGGAGC GGCTCCTTCG GGGAGATCTA CCTCGCCACG 
CACGTCGACA CGTACGAGAT AGTCGCCGTC AAGATTGAAA GCAGCAAAAC 
AAATCATCCC CAGTTGCTTT ATGAGGCCAA GCTGTATAAT GCTCTTCAGG 
GAGGGACTGG AATTGCAAAC ATAAAATGGT GTGGCATCGA TGGTGAGGAC 
AATGTGCTTG TTATTGATTT GCTGGGGCCA AGCCTTGAGG ATCTATTTGT 
TTATTGTGGT CGAAGATTCT CGCTAAAGAC GGTCTTGATG TTAGCGGATC 
AGATGATAAC AAGAGTAGAA TTCATGCATT CCAAGGGATA TTTGCACAGA 
GATATCAAGC CTGATAACTT CCTCATGGGC CTTGGTCGTA AAGCTAACCA 
GGTCTACATT ATTGACTTTG GGCTTGCAAA GAGGTACCGT GACGCAACTA 
CTAATCGCCA CATACCTTAT AGGGAAAATA AAAACTTGAC CGGCACAGCT 
CGATATGCAA GTTGCAACAC TCATCTTGGC ATTGAGCAAA GCCGAAGAGA 
TGATTTGGAA TCCATTGGTT ATGTTCTTCT GTATTTTCTC AGGGGAAGGT 
AGTATTCTTC AGTGTTAATA AGCTATTCAG AGTATATTTT TCCTTCTCGT 
TGTGGCAGAA TAATTTATGA TTGTAAGATA ATATCTGTAA CTGCAGCATG 
ACCATTGTTA ACAAAAAAGT AGTTATATCC TCTTAACATT AATAAGCCAG 
CTAGATTTAG TCTTGAATTT GCCATGTGCT ATTGTGCTTG TATTATCCAT 
AGATTTTTGT TTCTCTCTCT AAACTAGCCA TACATTTTGT CCAGTCTTCC 
TTGGCAGGGT TTAAAAGCTG CCACAAAGAA GCAGAAATAC GATAAAATAA 
GTGAGAAAAA GCTCGCAACA CCCATCGAGG TTGTTTAAGT TTGCATGCTT 
TAATTTATGT GAATTATTCA CACCTTTTTG TATCATTGAT GTGATTGCTT 
ATGGAGTTTT TGGTGCAGGT TTTATGTAAA TCCCATCCTG TTGAATTTGC 
TTCTTATTTT CATTATTGCC ATTCATTGAC ATTCGATCAA CGGCCGGATT 
ATGGATTTTT GAGAAGGCTC TTTAGAGATT TGGCTGACCG TGAAGGTTAT 
CAGTATGATC ATGTTTTTGA TTGGACACTG TTGAAGTGCA AACAATCCCA 
AAAAGCAAAG GCTCAACAAC AAGATCCAGG TGTAAGTAGC CGGGCGGTTC 
CAACGAATAT TGAGAAGCAC CAAGTTAGTG TGTCACGCCC AACAGAAGCT 
TCTGGTCAGC TTGAATCAGA GCAACGCCCA GCGATTAGAA TGCAATTCAA 
ATCTACTGCT GAAAACAGTC GTTCAAGTAA TCGGCATACT GACAAATTGA 
GAGTTGGTAC TAGCACTGAA AATGTCTTGC TGCAATCCAC ATCATTTGGC 
CATGCTGATG CTCCAAGGAG GAATATAGCA ATCTCAAAAA CTCAGGGCCT 
CGTTGATTCC AATGCTCATG GAACGAACAA TCCAGGGCCT TCTAATCACC 
TTTAGCATCT GTATCAGTTC ATGAGAGCAT ATTGGTCCAT GCAGACCACC 
ATTGGTCACT GTATATGACT TCGGGAGAGA ATCCAGAGCA AAGCTGTATG 
CCCTCAAATG TTTTGGTGCA TGAAGCCGTT GCCAAAAATT GCTGTCAGGC 
TTTTAAGGTG TCCTCTGTAT TGATTGAGGT GATTACTACC TAACAGAAAC 
AGTGGTTAGG TGTGCTGTTA GCCTGTTACT GTTCAGCATC TTTTAGCGTG 
CAGTGGTCAA GAAGTTCACT TTTCCATATT ATGTGGATAA TATATGGAAG 
CTTAGGAATG TCAGTACCCT CTTTTGTGTT CTACATGTGT GAATGCATTG 
TAACGTTTTA CCTGGGCTCA TTTATTCAGG GTTCTTTGCC AATTAAAATT 
TTAACGATGC TATAATGATT GCTAAAAGAG ATCTTGGAGG CTCATCGGAA 
CAGCTTTAGC CATAATTAGG GATCAGCGCC AGCGCGATAA TGGAACTTAC 
ACTCATCATC TAATTGTGGG ATCTCCATCT GACTTTCAGT TATGTCAGTT 
TGCTGCTGTC AATCCACCAG CCAAAAATTG AGATCTTATT CAGCTTGGAT 
GGGCTTGCAG TCTCTAATGA GTTTGGCATC ATATCCAACC TATCAAAGAT 
TATGAGGAGC TTTCTCCGAA GTATTTATGA TTTGGTTAGC ATGGCATACT 
TTATTTTCAT CTTGACTTGT CAACATCAAT ATGCCTAAGC AAATGGTTTG 
CTTCCTGTGA AAAATGGCAG AGCAAATTCA GGGCCATTTG GACTTTCAAG 
TGCAACTCTA CTGTGGCTTA TGATGCAGAT CACTCTTTGA ATCTATGAGA 
GCAAGAAACC TGGTGGTTTT GTTTCACAGA GGTAAATTGG TTATCATTTG 
TGCCATGTGA GCTGTTGACA CTTGGCGAAC ATGGCTTGGC TGGTTTGTGT 
TCTGCTAGAT GATTTCTACT CTGATGTGTA ATTGAAGAGC TCTCGTGTCA 
TAATTTGTAT AGAATCAATA TTTCATTATT CTAATATTTA TAAAGACATC 
CAAATGAAAG CGGGGTTTTT GGCATGGAGC TTCAACTTGT TTGAGTTAAA 
AGGAATGAAA TCGATTGCTT ATACCATTCT G

Gene models with high sequence identity

AT4G28880.1 [+] show detail - casein kinase I-like 3
E-value: 2e-105; Score: 381.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	CASEIN KINASE	8.4e-26
HMMPanther	CASEIN KINASE-RELATED	8.4e-26
HMMPanther	CASEIN KINASE	6.7e-139
HMMPanther	CASEIN KINASE-RELATED	6.7e-139
HMMSmart	Serine/threonine-protein kinase domain	1.3e-09
HMMSmart	Tyrosine-protein kinase, catalytic domain	0.003
HMMPfam	Casein kinase 1 gamma C-terminal	7.8e-11
HMMPfam	Serine/threonine-protein kinase-like domain	3.6e-33
superfamily	Protein kinase-like domain	4e-54
ProfileScan	Protein kinase, catalytic domain	29.135
PatternScan	Protein kinase, ATP binding site	0
PatternScan	Serine/threonine-protein kinase, active site	0
Gene3D	no description	0.00014
Gene3D	no description	2.4e-26
Gene3D	no description	3e-37

See the detailed result >

AT4G28880.1

Model type: Protein coding
Short Description: casein kinase I-like 3
Computational Description: casein kinase I-like 3 (ckl3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 4 (TAIR:AT4G28860.1); Has 64022 Blast hits to 63665 proteins in 2312 species: Archae - 48; Bacteria - 11126; Metazoa - 24220; Fungi - 7316; Plants - 9570; Viruses - 322; Other Eukaryotes - 11420 (source: NCBI BLink).
Link: InterPro Scan - TAIR