K28520

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28520

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28520

Determination of introduced cDNA(s)

  • J023007D20 - Rice Full-length cDNAs - Original: J023007D20

    full reading [+] show sequence

    Nucleotide sequence: J023007D20 - full reading
    TGGTCCCCTG TCTCTCTACC CAAGTACTCA GTCGGCGCAA CGCAACACAG 
    TCAGAGTGAT CGCCAGTGGG GAAGGCTACC AGCAGCAATC CAATCTAATC
    CACCTCCACT CCCCCGCCGC CGCCGCACCT GGAGTGCCCG GATCCGCCGC
    CGCCGCCTCC TCTGGGGTTG ATTGATGGCC ACGCCGTTCC ACAGCCCGCC
    CTGCCCAACA GCCGAGCTTC TCCTCCACCG TCTCTAGAAG CTTCACCCCC
    CCCCCCCCCA CGTCGCCGCT TCCCAAACCC TAGCGTAGCG CCTCGTCGAG
    GGTGAGAAGG AGGGTGGGCA TGGATAGGAT CGTCGGGGCT AAGTACAAGC
    TGGGCCGCAA GATCGGGAGC GGCTCCTTCG GGGAGATCTA CCTCGCCACG
    CACGTCGACA CGTACGAGAT AGTCGCCGTC AAGATTGAAA GCAGCAAAAC
    AAATCATCCC CAGTTGCTTT ATGAGGCCAA GCTGTATAAT GCTCTTCAGG
    GAGGGACTGG AATTGCAAAC ATAAAATGGT GTGGCATCGA TGGTGAGGAC
    AATGTGCTTG TTATTGATTT GCTGGGGCCA AGCCTTGAGG ATCTATTTGT
    TTATTGTGGT CGAAGATTCT CGCTAAAGAC GGTCTTGATG TTAGCGGATC
    AGATGATAAC AAGAGTAGAA TTCATGCATT CCAAGGGATA TTTGCACAGA
    GATATCAAGC CTGATAACTT CCTCATGGGC CTTGGTCGTA AAGCTAACCA
    GGTCTACATT ATTGACTTTG GGCTTGCAAA GAGGTACCGT GACGCAACTA
    CTAATCGCCA CATACCTTAT AGGGAAAATA AAAACTTGAC CGGCACAGCT
    CGATATGCAA GTTGCAACAC TCATCTTGGC ATTGAGCAAA GCCGAAGAGA
    TGATTTGGAA TCCATTGGTT ATGTTCTTCT GTATTTTCTC AGGGGAAGGT
    AGTATTCTTC AGTGTTAATA AGCTATTCAG AGTATATTTT TCCTTCTCGT
    TGTGGCAGAA TAATTTATGA TTGTAAGATA ATATCTGTAA CTGCAGCATG
    ACCATTGTTA ACAAAAAAGT AGTTATATCC TCTTAACATT AATAAGCCAG
    CTAGATTTAG TCTTGAATTT GCCATGTGCT ATTGTGCTTG TATTATCCAT
    AGATTTTTGT TTCTCTCTCT AAACTAGCCA TACATTTTGT CCAGTCTTCC
    TTGGCAGGGT TTAAAAGCTG CCACAAAGAA GCAGAAATAC GATAAAATAA
    GTGAGAAAAA GCTCGCAACA CCCATCGAGG TTGTTTAAGT TTGCATGCTT
    TAATTTATGT GAATTATTCA CACCTTTTTG TATCATTGAT GTGATTGCTT
    ATGGAGTTTT TGGTGCAGGT TTTATGTAAA TCCCATCCTG TTGAATTTGC
    TTCTTATTTT CATTATTGCC ATTCATTGAC ATTCGATCAA CGGCCGGATT
    ATGGATTTTT GAGAAGGCTC TTTAGAGATT TGGCTGACCG TGAAGGTTAT
    CAGTATGATC ATGTTTTTGA TTGGACACTG TTGAAGTGCA AACAATCCCA
    AAAAGCAAAG GCTCAACAAC AAGATCCAGG TGTAAGTAGC CGGGCGGTTC
    CAACGAATAT TGAGAAGCAC CAAGTTAGTG TGTCACGCCC AACAGAAGCT
    TCTGGTCAGC TTGAATCAGA GCAACGCCCA GCGATTAGAA TGCAATTCAA
    ATCTACTGCT GAAAACAGTC GTTCAAGTAA TCGGCATACT GACAAATTGA
    GAGTTGGTAC TAGCACTGAA AATGTCTTGC TGCAATCCAC ATCATTTGGC
    CATGCTGATG CTCCAAGGAG GAATATAGCA ATCTCAAAAA CTCAGGGCCT
    CGTTGATTCC AATGCTCATG GAACGAACAA TCCAGGGCCT TCTAATCACC
    TTTAGCATCT GTATCAGTTC ATGAGAGCAT ATTGGTCCAT GCAGACCACC
    ATTGGTCACT GTATATGACT TCGGGAGAGA ATCCAGAGCA AAGCTGTATG
    CCCTCAAATG TTTTGGTGCA TGAAGCCGTT GCCAAAAATT GCTGTCAGGC
    TTTTAAGGTG TCCTCTGTAT TGATTGAGGT GATTACTACC TAACAGAAAC
    AGTGGTTAGG TGTGCTGTTA GCCTGTTACT GTTCAGCATC TTTTAGCGTG
    CAGTGGTCAA GAAGTTCACT TTTCCATATT ATGTGGATAA TATATGGAAG
    CTTAGGAATG TCAGTACCCT CTTTTGTGTT CTACATGTGT GAATGCATTG
    TAACGTTTTA CCTGGGCTCA TTTATTCAGG GTTCTTTGCC AATTAAAATT
    TTAACGATGC TATAATGATT GCTAAAAGAG ATCTTGGAGG CTCATCGGAA
    CAGCTTTAGC CATAATTAGG GATCAGCGCC AGCGCGATAA TGGAACTTAC
    ACTCATCATC TAATTGTGGG ATCTCCATCT GACTTTCAGT TATGTCAGTT
    TGCTGCTGTC AATCCACCAG CCAAAAATTG AGATCTTATT CAGCTTGGAT
    GGGCTTGCAG TCTCTAATGA GTTTGGCATC ATATCCAACC TATCAAAGAT
    TATGAGGAGC TTTCTCCGAA GTATTTATGA TTTGGTTAGC ATGGCATACT
    TTATTTTCAT CTTGACTTGT CAACATCAAT ATGCCTAAGC AAATGGTTTG
    CTTCCTGTGA AAAATGGCAG AGCAAATTCA GGGCCATTTG GACTTTCAAG
    TGCAACTCTA CTGTGGCTTA TGATGCAGAT CACTCTTTGA ATCTATGAGA
    GCAAGAAACC TGGTGGTTTT GTTTCACAGA GGTAAATTGG TTATCATTTG
    TGCCATGTGA GCTGTTGACA CTTGGCGAAC ATGGCTTGGC TGGTTTGTGT
    TCTGCTAGAT GATTTCTACT CTGATGTGTA ATTGAAGAGC TCTCGTGTCA
    TAATTTGTAT AGAATCAATA TTTCATTATT CTAATATTTA TAAAGACATC
    CAAATGAAAG CGGGGTTTTT GGCATGGAGC TTCAACTTGT TTGAGTTAAA
    AGGAATGAAA TCGATTGCTT ATACCATTCT G

    Gene models with high sequence identity

    1. AT4G28880.1 [+] show detail - casein kinase I-like 3
      E-value: 2e-105; Score: 381.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CASEIN KINASE 8.4e-26
    HMMPanther CASEIN KINASE-RELATED 8.4e-26
    HMMPanther CASEIN KINASE 6.7e-139
    HMMPanther CASEIN KINASE-RELATED 6.7e-139
    HMMSmart Serine/threonine-protein kinase domain 0.0000000013
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.003
    HMMPfam Casein kinase 1 gamma C-terminal 0.000000000078
    HMMPfam Serine/threonine-protein kinase-like domain 3.6e-33
    superfamily Protein kinase-like domain 4e-54
    ProfileScan Protein kinase, catalytic domain 29.135
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 0.00014
    Gene3D no description 2.4e-26
    Gene3D no description 3e-37

    See the detailed result >

    AT4G28880.1

    Model type
    Protein coding
    Short Description
    casein kinase I-like 3
    Computational Description
    casein kinase I-like 3 (ckl3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 4 (TAIR:AT4G28860.1); Has 64022 Blast hits to 63665 proteins in 2312 species: Archae - 48; Bacteria - 11126; Metazoa - 24220; Fungi - 7316; Plants - 9570; Viruses - 322; Other Eukaryotes - 11420 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR