K28521

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28521

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28521

Determination of introduced cDNA(s)

  • J023080P07 - Rice Full-length cDNAs - Original: J023080P07

    full reading [+] show sequence

    Nucleotide sequence: J023080P07 - full reading 
    TTGAGGCTTG AGGAGCCAAG AGGAAGAGGA GAGCAATGGG GGAAGCTGCC 
    GGCGACCGCG TCCTGAGCCG CCTCCACAGC GTCAGGGAGC GCATCGGCGA 
    CTCCCTCTCC GCCCACCCCA ATGAGCTCGT CGCCGTCTTC ACCAGGCTGG 
    TTAACCTCGG AAAGGGAATG CTTCAGGCCC ACCAGATCAT TGCTGAGTAC 
    AACAACGCAA TCTCTGAGGC TGATCGTGAG AAGCTGAAGG ACGGTGCTTT 
    TGAGGATGTC CTGAGGAGTG CACAGGAGGG GATTGTTATC TCCCCATGGG 
    TTGCCCTTGC CATCCGCCCG AGGCCCGGTG TCTGGGAGTA TGTGAGGGTC 
    AATGTGAGCG AGCTCGCTGT TGAGTTGCTG ACAGTCCCCG AGTACTTGCA 
    GTTCAAGGAA CAGCTTGTGG AAGAAGGCAC CAACAACAAC TTTGTGCTTG 
    AGCTGGATTT CGAGCCATTC AATGCCTCCT TCCCTCGTCC TTCTCTGTCG 
    AAGTCCATTG GCAATGGTGT GCAGTTCCTC AACAGGCATC TGTCATCGAA 
    GCTCTTCCAT GACAAGGAGA GCATGTACCC ACTGCTCAAC TTCCTTCGTG 
    CACACAACTA CAAGGGCATG ACCATGATGT TGAATGACAG AATCCGCAGT 
    CTCAGTGCTC TCCAAGGTGC TCTGAGGAAG GCTGAGGAGC ATCTTTCTGG 
    TCTTTCAGCA GACACCCCTT ACTCAGAATT CCACCACAGG TTCCAGGAAC 
    TTGGTCTGGA GAAGGGTTGG GGTGACTGTG CCAAGCGTTC CCAGGAGACC 
    ATTCACCTCC TTTTGGACCT TCTTGAGGCC CCTGATCCGT CCACCCTCGA 
    GAAGTTCCTT GGAACAATCC CAATGGTGTT CAATGTTGTC ATTATGTCCC 
    CACACGGTTA CTTCGCGCAA GCCAATGTCT TGGGTTACCC TGACACTGGA 
    GGGCAGGTTG TCTACATTTT GGACCAAGTC CGTGCTATGG AGAATGAGAT 
    GCTTCTGAGG ATCAAGCAGC AAGGTCTCAA TATTACACCA CGCATCCTTA 
    TTGTCACCAG GTTGCTCCCT GATGCAACTG GCACCACCTG CGGTCAGCGT 
    CTTGAGAAGG TCCTTGGCAC CGAGCACACC CACATCCTAC GTGTGCCTTT 
    CAGAACTGAA AATGGAATTG TTCGCAAGTG GATCTCACGT TTTGAAGTCT 
    GGCCGTACCT GGAAACATTC ACTGATGATG TCGCGCACGA AATTGCTGGA 
    GAGCTCCAGG CCAATCCTGA CTTGATCATC GGAAACTACA GTGACGGAAA 
    CCTTGTTGCA TGCTTGCTTG CACACAAGAT GGGTGTTACC CATTGTACCA 
    TTGCCCATGC GCTTGAGAAA ACCAAGTACC CCAACTCTGA CCTCTACTGG 
    AAGAAGTTTG AGGATCACTA CCACTTCTCA TGCCAGTTCA CAACTGACTT 
    GATTGCGATG AACCACGCTG ACTTCATCAT CACCAGTACC TTCCAAGAGA 
    TTGCCGGAAA CAAGGACACT GTTGGTCAGT ATGAGTCTCA CATGGCATTC 
    ACCATGCCTG GTCTGTACCG TGTTGTCCAC GGTATTGATG TTTTTGACCC 
    GAAGTTTAAC ATTGTCTCGC CTGGTGCGGA CATGTCCATC TACTTCCCTT 
    ACTCTGAGTC TCGTAAGAGG CTCACCTCCC TCCACCCAGA GATTGAGGAG 
    TTGCTCTACA GCGAAGTTGA CAACAACGAG CACAAGTTTA TGCTGAAGGA 
    CAGGAACAAG CCAATCATCT TCTCCATGGC TCGTCTTGAC CGTGTCAAGA 
    ACTTGACTGG TCTGGTTGAG CTGTATGGTC GCAACCCTCG CCTGCAAGAG 
    CTGGTTAACC TTGTGGTTGT CTGTGGTGAC CATGGCAACC CATCTAAGGA 
    CAAGGAGGAG CAGGCTGAGT TCAAGAAGAT GTTTGACCTT ATTGAGCAAT 
    ACAACTTGAA TGGCCACATC CGCTGGATCT CCGCGCAGAT GAACCGTGTC 
    CGCAACGGTG AGCTCTACCG TTACATCTGC GACACCAAGG GTGCTTTTGT 
    GCAGCCCGCT TTCTACGAGG CATTCGGTCT CACTGTTGTT GAGTCCATGA 
    CCTGTGGTCT CCCGACATTC GCAACCGCCT ATGGTGGTCC AGCTGAGATC 
    ATCGTGAACG GAGTGTCTGG CTTCCACATT GACCCATACC AGGGTGACAA 
    GGCCTCGGCG CTGCTCGTTG AGTTCTTTGA GAAGTGCCAG GAAGACCCCA 
    GCCACTGGAC CAAGATCTCG CAGGGCGGTC TTCAGCGTAT CGAGGAGAAA 
    TACACCTGGA AGCTCTACTC TGAGAGGCTG ATGACCCTCA CCGGCGTCTA 
    CGGATTCTGG AAGTACGTCT CGAACCTGGA GAGGCGTGAA ACCCGCCGCT 
    ACCTTGAGAT GCTGTATGCC CTCAAGTACC GCACCATGGC TAGCACCGTC 
    CCGTTGGCCG TCGAGGGCGA GCCGTCGAAC AAGTGAGCTG GCCAACATCT 
    CAGGCTGAGA CTCTGAAAGA GGAGAGCATT GGAGTTTCTT TGCTTTGTTT 
    CCATTCTCTG GTTTCAGAGA TGAAAAGAGA AGAGAGATAT TTCAGGATGC 
    TTTGCATTCC TAGGCACTGC TCTTTTTCCT TAAGAAAGTA AGGTCGATTG 
    AATTTGGGAG TTTTCTAGTT TGATTTAGTT GGGGGTGAGT TCAGTGGAAT 
    GTGGTGTGTG GTTGGTGCTC TGTCTCCTCT TGTTATTGGG ATGTTACCTA 
    TGAATAATAG AAACGGCCTT GGTGCCGTTT CTGCAATAAT ATATTGTAGC 
    ATCCTTGTTT CCAAGAAAAA ATTGTCACTG AAATGCTCAC TTCTCCTTGG 
    GGTTATCTTA CTGTTTATTT ATGTTTCACC AATCGAAATC CTTACTGTGC 
    ATCTTTGACT

    Gene models with high sequence identity

    1. AT3G43190.1 [+] show detail - sucrose synthase 4
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sucrose synthase 0
    HMMPfam Glycosyl transferase, group 1 2.1e-35
    HMMPanther SUCROSE SYNTHASE 0
    HMMPanther GLYCOSYLTRANSFERASE 0
    HMMTigr Sucrose synthase, plant/cyanobacteria 0
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 3.9e-46
    Coil coiled-coil 0

    See the detailed result >

    AT3G43190.1

    Model type
    Protein coding
    Short Description
    sucrose synthase 4
    Curator Summary
    Encodes a protein with sucrose synthase activity (SUS4).
    Computational Description
    sucrose synthase 4 (SUS4); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: sucrose biosynthetic process, response to hypoxia; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 1 (TAIR:AT5G20830.2); Has 7692 Blast hits to 7689 proteins in 1582 species: Archae - 293; Bacteria - 4740; Metazoa - 106; Fungi - 81; Plants - 801; Viruses - 0; Other Eukaryotes - 1671 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR