K28522

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28522

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28522

Determination of introduced cDNA(s)

  • J033073M10 - Rice Full-length cDNAs - Original: J033073M10

    full reading [+] show sequence

    Nucleotide sequence: J033073M10 - full reading 
    GGAGAGAGAG AGATTGAGAG AGCGCTGCAG CCGCCACCTA TTCTCGCCTT 
    GGCCATGGGA GGATCACGAT TCACGAGCTG GAGCTGGAGC TCGAGCAGTC 
    AACAGAAGAA GGGAGGAAAG GAATCCTCCC TCACCCCACC CGAGCAGGTA 
    TTGGGCTCGG AATCGGAAGG GGAATTGGAA GCGGAAGCGG AAGCGGAGCC 
    GATTCTGATG ATCTGATCTG ATCGAGGCCA GGGGACTAAT ATCTTGTTGT 
    AAGGAACCTA GTGGAGTAGT ATTTGATTTG CCTGCTGCAT CGACACCAAT 
    CAATCTCCCC ACTACTATGG CTTCTTCGCG CGCTATCGAG GAGGAACTCG 
    AAACTGTAGG AGATGACAGG ATCAGCGCGC TTCCTGACGA TATTCTGCTG 
    CAAATCCTTG AGAGACTTGA CCTGCCTATG GCAATTCGGA CCAGCACGCT 
    CTCCAGGAGA TGGCTGCAAC TCCCTCGCTT ACTCTCCCAT CTCATCATAG 
    ATATCACCCA CTTCATGCCT GCTCCTCCTC GCCGCGCTGT GAATTTCAAT 
    GTAGATCAGA TCATGGCTGC CTACACGGCT GCAGTCAACA ACCTGCTCTT 
    GTCATCCCCC TCCAGCAGTA ACAGCAACAC GAGAAGAATT ATCAAGTGAA 
    TGCAGCTCAG TTTCTTCCTC TCTGAAGACC CTTCCTACCT ATGCTCTGTT 
    GGCCATGCCG TTGGGGCCAT TGTCGATGCC GGAAAAACCG ACTTGCTCGA 
    GTTCTCACTG TGGTCGGATG TTGGTAAACT CACCCTTGAG CATTGCCAGC 
    TGCTCAGACA ACGCTTCATG TCATTCTCTC ACTCTTGCCC GGTTGCTTTC 
    AGGTGGCTCA CCAATCTTGC CCTGCGCAAC CTCGCGTTTC AAGAATCGGA 
    CGTCTCCCAT ATCCTAAACA CATGCCATAA CCTGAAGTTC CTTGCCTTGT 
    GTTCTTGTGT CTCGGACTTT GTTGTCCTCA AGATCGATGC CCCACACTCG 
    GAGCTCCTCA CGCTTGAAAT TGTCACTTGT GGGTTTGACA GAGCTGATCT 
    GATCCATTTG CCAAATCTTA GGCGGGTAGT CTGCTGGGAT TGGTGCCTTC 
    CAAACCCCCC AATCCGTTTT GGCAATGTTA CTCGCCTTCA CAACATGAGC 
    CTCTCTTGCT CTGCGACGTA TGACCAGATG CCGTTCAGGT TGACCGAGCT 
    TATATCAAGC GCCACAAACT TAACTATCTT ATACCTGGAT TTCCAAGATC 
    AGATGATTTG GATTGAGCCA CAAGGTCCTA AACTTCTCTA TCCTGTATTC 
    AGCAACGTCA GAGATGTCTA TCTTTGCAAC ATTTTCTATG AATGTGACCT 
    GAACTGGACT GTGTTTGTCC TTGAAGCTGC AGCTCGTCTC AGCAACTTTT 
    ATCTCAAGTT ATGTCAGCAT CCATGTGAAA GGAACAGATG CGAGGACAGC 
    GCTGAGAAGG TCAATTTGTT ATGGGATCAG ATGTCATCTG ATTTCAAACA 
    TCGCCACTTG AATCTATTAG AGATTACAGG ATTTGCGATG GATGATAAGA 
    TGATAAATTA TACCAGGCTT ATTATGGAGC GAGCTGTGAA CTTGAAGAGA 
    ATCCGCTTGC TCGATCAAGT TCCATGTGAC AAGGGCAATG CCATGAATGG 
    TATGGGATCT ACATCCTCAA ACAAATGGAG ATTTCCTGTT GACCAAGGAG 
    AAAAGAGTCT AATAAAGCAG AAGCTTATAG ATGGATTCTC CTCGTCTGCT 
    GAAATAACCA TAGGATGAAT CAGTTCTATT TATTCTAGTC GATTGTAAAT 
    TATTAGTTGT ATAATGGTCG TCGATTGTAA AAGTACGTAG CTAATAAAAT 
    TGTCATTTGG ACCAAGAAGT ATCATGAAAT ATTCTGGGTA ATCCTAGCCC 
    TTTTCAGCCC

    Gene models with high sequence identity

    1. AT1G80960.3 [+] show detail - F-box and Leucine Rich Repeat domains containing protein
      E-value: 0.000004; Score: 50.40

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF52047 0.00000015
    HMMPfam F-box domain, cyclin-like 0.00029
    superfamily F-box domain, Skp2-like 0.0000000079
    ProfileScan F-box domain, cyclin-like 9.603

    See the detailed result >

    AT1G80960.3

    Model type
    Protein coding
    Short Description
    F-box and Leucine Rich Repeat domains containing protein
    Computational Description
    F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR