K28527

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28527

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28527

Determination of introduced cDNA(s)

  • J023042H10 - Rice Full-length cDNAs - Original: J023042H10

    full reading [+] show sequence

    Nucleotide sequence: J023042H10 - full reading 
    GATGAACATG AGGACCATCA TATCCCTCAT CCCAGATACA TGATCTGTAC 
    TGTCTCCTCC TCTCTAGCTT CTCTCCTCTC CCTGCTGTGC CCCTTGCTTT 
    GTTGCTTGGT CAATTAGAGC TAAGCAGCAA GCTAGCTTCC TGGAAGCAAG 
    GCCGGCGCCT GGCTGGGACA AGAACCACAG GAACCACAGC TGACTGATTG 
    ATCAATCAAT CAATCTTCTG CTGCCCTGCT GCCTCACAGC CTCAGCAAGA 
    CAATCAATTT TGGCCCTCTT GAGGCTCCGG CCGGTCGCCG ACTCGCCGTC 
    GTCGAAGGTG CTCTCCGGCC GGCGGAGTTA ACATTGAGCT TGATTTCAAG 
    CCGCGCTCCG ATCCGACCGG CAAAGCGCCG AAGCTGCCTT CCGTTTGTTT 
    CACTCTGGTC TCTGGGGGCT CGCCATCAGC CATCCGTACC GAGCTGTAGT 
    GTGCGCGGTT TTGTCGCGTC GTCGTACGTC GAGAATCCGT GAGCCAGACA 
    GACAAGCCAG TGGTTTGGTG ATTCTTGCGG CGGCGCGGCG ATGGAGACCT 
    TCGGCTGGGC CGGCGGCGGG CAGCTGATGC ACCACGACGA CATCTACTTG 
    CCGCGCTCGG TGGGGTGCGG GCGGCCGTTC GAGCTGGACG ACGCGTTCCT 
    GGGCGCGTGC TTCGGCGCCC AGCTCCAGTG CGACGGTGGC GTCGGCGGCG 
    GCGACGGCGG CGGGTGTCTG CAGGGTACCT CGGGATTTGG CGCCGTGGCT 
    GGAGACCCGT TGGGGTTGCT GTGCTCGGGG GACGTGTTTG CGTCTGTCGC 
    CGAGGGCGCC GGCGGCGCGC ACGACGACGG CCTCCTCGAC GCGGCGCTCG 
    CCTTCTCCCG GAATCAGCTC GGGGGCGCCG CCTGCGACGG GAGCGACGGC 
    GGGGCCGTGT CGAACGGCGC CATGCTGTCC AGCTACAGCG GCACCACCGG 
    CGGCAACATC TCCTCCGGCG AGTCGAATAA CTACAGCGGC GGCGGCGGTG 
    GCTACGACGC CGATGTGGTG TCGCCGACGT CCACCATGTC CGCAGCCACA 
    CAGTCGCTCC ACCCCAAGCG AAAGCTATAC GACGACCACC ACCACCCCGC 
    CGGCATAGCA GCCGCAGCCG CAGCGCCACC GCTGGCGCCG TGCCCACGCC 
    CCACCACCGG CGCCGTCGCC GCGAAGCGGA GGGCTTCCAC GTCAGCAACA 
    AGCATCACCT TCGGCCACCA GCCGCACCAC CACCACGCGG GCGCCACCAC 
    CGCCGGGTAC GAGCCTGACA TGGAAGCCAT GGCGCAGGTG AAGGAGATGA 
    TCTACCGGGC GGCGGCCATG CGCCCCGTCC ACCTCGGCAC GGAGGCCGCC 
    GCCGACAAGC CCCGCCGCAA GAACGTGCGC ATCTCGAGCG ACCCGCAGAC 
    GGTGGCGGCG CGTCTCCGGC GGGAGCGCGT CAGCGACCGC CTCCGCGTCC 
    TGCAGAAGCT GGTCCCCGGC GGCAACAAGA TGGACACGGC GTCCATGCTC 
    GACGAGGCGG CCAGCTACCT CAAGTTCCTC AAGTCCCAGG TCCAAAAGCT 
    GGAAACCCTA GGCACCACCA CCACCACGTC CAAGTTACCG CAGCAGTATT 
    ACAGCGGCAA CATCAACAGC AGCAATAATC ACCATGGATT CCTCGGATTC 
    GCAGCAAATA ACAACACCAT TTCAGCTGGC TACGCAAATT CTAATGCTGG 
    AAATGCAACG AAACTGTTGT AGCACTGTGG CTAGCACAAG TACTTGATAC 
    GCACAACGTA CGCGTGGTCT CGTCGTCTAT ATACATGTAG TAACATGCTG 
    CTGTTTTCTA CTGTTTCTAG GCTTGGTGGT GATCAGTGTA CGTACACACG 
    GCACATAATT GGAGTCTTAA TTAGTGGTGG AGTGCATGCT GATTTAGTTC 
    GTGGTCATGT TCTTGTGCAA GATTTAGATT TATAATCTTC CGCTGGCGGA 
    TCAGCTGCAT GGAGTGAGAA GTTACATCAA ATTAAAGGGG CCATCTGATG 
    GTTCGTTCAA AAAAAAAAAA CGGGTGCCAT CTGATAGAGG AAAACATGTG 
    GTTCAATAAT GGAAAAGAGT GGCCTGGACG AGCAATTTGC GAGTGG

    Gene models with high sequence identity

    1. AT3G21330.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 3e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan Helix-loop-helix DNA-binding domain 11.112
    superfamily Helix-loop-helix DNA-binding 1.2e-10
    HMMSmart Helix-loop-helix DNA-binding domain 1.3e-11

    See the detailed result >

    AT3G21330.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G00120.1); Has 2796 Blast hits to 2791 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 2786; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR